miRNA display CGI


Results 61 - 80 of 239 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 3' -54.9 NC_006273.1 + 157882 0.71 0.804931
Target:  5'- -aUG-GGCGGCugGUUgguggagagcuugAGUAGCUCGCu -3'
miRNA:   3'- aaACgCUGCCGugUAG-------------UCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 202266 0.7 0.82312
Target:  5'- --cGCGGCGGCGCGUUAuaAGCacCGUg -3'
miRNA:   3'- aaaCGCUGCCGUGUAGUcgUCGa-GCG- -5'
29826 3' -54.9 NC_006273.1 + 20387 0.76 0.509366
Target:  5'- -cUGCGACGGUcgcugccACAgCAGCGGCgUCGCc -3'
miRNA:   3'- aaACGCUGCCG-------UGUaGUCGUCG-AGCG- -5'
29826 3' -54.9 NC_006273.1 + 116629 0.75 0.539707
Target:  5'- -gUGCGuaccGCGGCagACAUCAGCAGCacgUUGCg -3'
miRNA:   3'- aaACGC----UGCCG--UGUAGUCGUCG---AGCG- -5'
29826 3' -54.9 NC_006273.1 + 41236 0.74 0.610109
Target:  5'- ----aGACGGCACG-CAcacGCAGCUCGCc -3'
miRNA:   3'- aaacgCUGCCGUGUaGU---CGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 116980 0.73 0.661009
Target:  5'- -cUGCGGCGGCuugggCAGCAGCg-GCg -3'
miRNA:   3'- aaACGCUGCCGugua-GUCGUCGagCG- -5'
29826 3' -54.9 NC_006273.1 + 189954 0.72 0.731047
Target:  5'- --aGCucguCGGCcgGCGUgGGCGGCUCGCg -3'
miRNA:   3'- aaaCGcu--GCCG--UGUAgUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 2223 0.72 0.750429
Target:  5'- --gGCGAUGGCGgGUcCGGCGGCgUCGg -3'
miRNA:   3'- aaaCGCUGCCGUgUA-GUCGUCG-AGCg -5'
29826 3' -54.9 NC_006273.1 + 196679 0.71 0.769399
Target:  5'- --gGCGugGcGCACG-CAGCGGCcguaguugUCGCg -3'
miRNA:   3'- aaaCGCugC-CGUGUaGUCGUCG--------AGCG- -5'
29826 3' -54.9 NC_006273.1 + 115169 0.71 0.796922
Target:  5'- -gUGCuuCGGCuCAUCaccaacguggaaGGCGGCUCGCu -3'
miRNA:   3'- aaACGcuGCCGuGUAG------------UCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 86543 0.68 0.922135
Target:  5'- --aGCGGCGGCAa--CAGCcAGCgacgaUCGCc -3'
miRNA:   3'- aaaCGCUGCCGUguaGUCG-UCG-----AGCG- -5'
29826 3' -54.9 NC_006273.1 + 165698 0.68 0.916511
Target:  5'- --cGCGAuCGGCGgcCGUCAGCuccuGCUgCGUg -3'
miRNA:   3'- aaaCGCU-GCCGU--GUAGUCGu---CGA-GCG- -5'
29826 3' -54.9 NC_006273.1 + 150274 0.7 0.839737
Target:  5'- -aUGUGGauGCACGUgCGGgAGCUCGUg -3'
miRNA:   3'- aaACGCUgcCGUGUA-GUCgUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 71474 0.69 0.855608
Target:  5'- --gGCGGCGGCgAUcgCAGCcucCUCGCu -3'
miRNA:   3'- aaaCGCUGCCG-UGuaGUCGuc-GAGCG- -5'
29826 3' -54.9 NC_006273.1 + 153592 0.69 0.870677
Target:  5'- --aGCGGCGGCGugacCGGCGGUgcggUCGCg -3'
miRNA:   3'- aaaCGCUGCCGUgua-GUCGUCG----AGCG- -5'
29826 3' -54.9 NC_006273.1 + 173524 0.69 0.870677
Target:  5'- -cUGCucGGCGGCGUA-CAGCGGgUCGCg -3'
miRNA:   3'- aaACG--CUGCCGUGUaGUCGUCgAGCG- -5'
29826 3' -54.9 NC_006273.1 + 18877 0.69 0.884898
Target:  5'- -cUGCGcuggcACGGCGCAcUgGGCAccaucacacGCUCGCa -3'
miRNA:   3'- aaACGC-----UGCCGUGU-AgUCGU---------CGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 133250 0.68 0.901425
Target:  5'- --gGCGACGGCGCcacugccgcugcgauUuccgacacggacuugCAGCGGCUCGUc -3'
miRNA:   3'- aaaCGCUGCCGUGu--------------A---------------GUCGUCGAGCG- -5'
29826 3' -54.9 NC_006273.1 + 158957 0.68 0.910652
Target:  5'- --cGCGGCGGUACAgcUCGcGCAGgaCGa -3'
miRNA:   3'- aaaCGCUGCCGUGU--AGU-CGUCgaGCg -5'
29826 3' -54.9 NC_006273.1 + 87695 0.68 0.916511
Target:  5'- --gGUGGCGGUgguGCAgCGGCGGCUgaGCg -3'
miRNA:   3'- aaaCGCUGCCG---UGUaGUCGUCGAg-CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.