miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 147733 0.66 0.790212
Target:  5'- cGGGaCCAGCUGuCAUCucaGCUGGUaCGGc -3'
miRNA:   3'- -CCC-GGUCGAC-GUAGca-CGGCCGcGCU- -5'
29826 5' -61.6 NC_006273.1 + 45445 0.66 0.790212
Target:  5'- cGGCCgacgAGCUGCAgacggcUGUGUCGcGCGUGu -3'
miRNA:   3'- cCCGG----UCGACGUa-----GCACGGC-CGCGCu -5'
29826 5' -61.6 NC_006273.1 + 148862 0.66 0.790212
Target:  5'- -cGCC-GCUGCcgCGUGacgaCGGCGaCGGu -3'
miRNA:   3'- ccCGGuCGACGuaGCACg---GCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 194931 0.66 0.790212
Target:  5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3'
miRNA:   3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 93623 0.66 0.790212
Target:  5'- cGGCCugcgcAGCUucgcGCAUCcacuggcGCCGGCGCGc -3'
miRNA:   3'- cCCGG-----UCGA----CGUAGca-----CGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 234869 0.66 0.790212
Target:  5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3'
miRNA:   3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 38 0.66 0.790212
Target:  5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3'
miRNA:   3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 62257 0.66 0.789356
Target:  5'- uGGGCCuGCacgcucaUGCccuaCGUGUuguuuCGGCGCGAc -3'
miRNA:   3'- -CCCGGuCG-------ACGua--GCACG-----GCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 179918 0.66 0.781599
Target:  5'- cGGGUUAGgaaaUGCggCGUGCCGGC-Ca- -3'
miRNA:   3'- -CCCGGUCg---ACGuaGCACGGCCGcGcu -5'
29826 5' -61.6 NC_006273.1 + 40571 0.66 0.781599
Target:  5'- cGGcGCUuuCUGCG-CGcUGCCGGUGCGu -3'
miRNA:   3'- -CC-CGGucGACGUaGC-ACGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 633 0.66 0.781599
Target:  5'- cGGcGCUuuCUGCG-CGcUGCCGGUGCGu -3'
miRNA:   3'- -CC-CGGucGACGUaGC-ACGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 234088 0.66 0.781599
Target:  5'- aGGCgAGCUGCGUgugCGUGCCGucuGUGUu- -3'
miRNA:   3'- cCCGgUCGACGUA---GCACGGC---CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 177257 0.66 0.781599
Target:  5'- aGGCC-GCUGCG-CGUGCCcGUgGUGAa -3'
miRNA:   3'- cCCGGuCGACGUaGCACGGcCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 194150 0.66 0.781599
Target:  5'- aGGCgAGCUGCGUgugCGUGCCGucuGUGUu- -3'
miRNA:   3'- cCCGgUCGACGUA---GCACGGC---CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 164449 0.66 0.780731
Target:  5'- cGGCCgcGGCcGC-UCGaugacgaUGUCGGCGCGGc -3'
miRNA:   3'- cCCGG--UCGaCGuAGC-------ACGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 149737 0.66 0.772867
Target:  5'- uGGGCCGGCUGCcggCGcUGUuaCGggaGCGCGu -3'
miRNA:   3'- -CCCGGUCGACGua-GC-ACG--GC---CGCGCu -5'
29826 5' -61.6 NC_006273.1 + 179718 0.66 0.764025
Target:  5'- aGGGCCuGC-GCAacuaCGcGCCGcuGCGCGAa -3'
miRNA:   3'- -CCCGGuCGaCGUa---GCaCGGC--CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 173504 0.66 0.764025
Target:  5'- cGGuCCAGCUGU-UCGUGCaacugcucggCGGCGUa- -3'
miRNA:   3'- cCC-GGUCGACGuAGCACG----------GCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 190599 0.66 0.75508
Target:  5'- -cGCCGGCgccCAUCG-GCCG-CGCGAu -3'
miRNA:   3'- ccCGGUCGac-GUAGCaCGGCcGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 90626 0.66 0.75508
Target:  5'- cGGCC-GCcGCGUCGUGCCucCGCa- -3'
miRNA:   3'- cCCGGuCGaCGUAGCACGGccGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.