Results 21 - 40 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29826 | 5' | -61.6 | NC_006273.1 | + | 148862 | 0.66 | 0.790212 |
Target: 5'- -cGCC-GCUGCcgCGUGacgaCGGCGaCGGu -3' miRNA: 3'- ccCGGuCGACGuaGCACg---GCCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 194931 | 0.66 | 0.790212 |
Target: 5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3' miRNA: 3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 147733 | 0.66 | 0.790212 |
Target: 5'- cGGGaCCAGCUGuCAUCucaGCUGGUaCGGc -3' miRNA: 3'- -CCC-GGUCGAC-GUAGca-CGGCCGcGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 92123 | 0.66 | 0.75508 |
Target: 5'- aGGCCGGCUacggggaaacGCG-CGUGCgGGuCGCa- -3' miRNA: 3'- cCCGGUCGA----------CGUaGCACGgCC-GCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 62257 | 0.66 | 0.789356 |
Target: 5'- uGGGCCuGCacgcucaUGCccuaCGUGUuguuuCGGCGCGAc -3' miRNA: 3'- -CCCGGuCG-------ACGua--GCACG-----GCCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 18651 | 0.67 | 0.708136 |
Target: 5'- cGGGCCuuuugugcccAGCgGCAUgGUGCUgcucgacaaguuuGGCGUGGu -3' miRNA: 3'- -CCCGG----------UCGaCGUAgCACGG-------------CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 1972 | 0.67 | 0.736911 |
Target: 5'- gGGGCCGGCgacggggacGaCGUCGcGCCaGCgGCGAg -3' miRNA: 3'- -CCCGGUCGa--------C-GUAGCaCGGcCG-CGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 116870 | 0.67 | 0.727702 |
Target: 5'- uGGGUCGGCgucGCGguacguuggcCGUGUacgGGCGCGAu -3' miRNA: 3'- -CCCGGUCGa--CGUa---------GCACGg--CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 115708 | 0.67 | 0.727702 |
Target: 5'- gGGGUaauGC-GCAUCuUGCCGGUGcCGAu -3' miRNA: 3'- -CCCGgu-CGaCGUAGcACGGCCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 152623 | 0.67 | 0.709074 |
Target: 5'- uGGCCcGCUGCA-CG-GCCGcGCGUa- -3' miRNA: 3'- cCCGGuCGACGUaGCaCGGC-CGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 140510 | 0.67 | 0.69967 |
Target: 5'- cGGGaCCGaCUGcCGUCGaGCCGGgGCGu -3' miRNA: 3'- -CCC-GGUcGAC-GUAGCaCGGCCgCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 15655 | 0.67 | 0.690216 |
Target: 5'- cGGGCCcgcGGCUGCA-C-UGCCuGGUGaCGAc -3' miRNA: 3'- -CCCGG---UCGACGUaGcACGG-CCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 190037 | 0.67 | 0.727702 |
Target: 5'- gGGGuCCAGU----UCG-GCCGGCGCGc -3' miRNA: 3'- -CCC-GGUCGacguAGCaCGGCCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 175334 | 0.67 | 0.727702 |
Target: 5'- gGGGCaAGUuucgcuuuUGCggCGUacaggaGCCGGCGCGGg -3' miRNA: 3'- -CCCGgUCG--------ACGuaGCA------CGGCCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 103484 | 0.67 | 0.687372 |
Target: 5'- -cGCCAGCUGCGUggagGUGCCgaagaagcccgccaGGUGCGu -3' miRNA: 3'- ccCGGUCGACGUAg---CACGG--------------CCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 130406 | 0.67 | 0.690216 |
Target: 5'- uGGCuCAGCUGCAUCGcgaccgcGCCcgcgucaugauGGCGCu- -3' miRNA: 3'- cCCG-GUCGACGUAGCa------CGG-----------CCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 126057 | 0.67 | 0.690216 |
Target: 5'- cGGCCGuucuacGCcgGCcgCGUGCCGGauccaGCGGu -3' miRNA: 3'- cCCGGU------CGa-CGuaGCACGGCCg----CGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 147955 | 0.67 | 0.690216 |
Target: 5'- cGGCCuagAGCaGCGUagcgcCGUGuuGGCGCGc -3' miRNA: 3'- cCCGG---UCGaCGUA-----GCACggCCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 141712 | 0.67 | 0.698727 |
Target: 5'- aGGGCgGGauccgccgccaUUGCGUCGUcccagcagggcgcGCCGGCGCc- -3' miRNA: 3'- -CCCGgUC-----------GACGUAGCA-------------CGGCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 132759 | 0.67 | 0.709074 |
Target: 5'- aGGGaCgAGCUGUAcgaCGUGCCGG-GCa- -3' miRNA: 3'- -CCC-GgUCGACGUa--GCACGGCCgCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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