miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 81956 0.68 0.671188
Target:  5'- -uGCCGGC-GCccgcCGUGCCGGUGaCGAg -3'
miRNA:   3'- ccCGGUCGaCGua--GCACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 36479 0.68 0.671188
Target:  5'- cGGGCUGGCgUGCuguuuucCGUGUugccgacggCGGCGCGGu -3'
miRNA:   3'- -CCCGGUCG-ACGua-----GCACG---------GCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 178960 0.68 0.665456
Target:  5'- cGGCUagAGCguggGCcgCGUGCCugggaacgugcgcacGGCGCGGu -3'
miRNA:   3'- cCCGG--UCGa---CGuaGCACGG---------------CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 206822 0.68 0.655883
Target:  5'- uGGCCGGCUGCAugcacauccacgcguUCGcGCaguGGCGUGc -3'
miRNA:   3'- cCCGGUCGACGU---------------AGCaCGg--CCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 159913 0.68 0.642454
Target:  5'- cGGCgGGUccUGCGUUGcuacUGCCGGCGaCGGc -3'
miRNA:   3'- cCCGgUCG--ACGUAGC----ACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 167152 0.68 0.652048
Target:  5'- cGGGCC-GCUGgaaGUCG-GCgGGCGgGGg -3'
miRNA:   3'- -CCCGGuCGACg--UAGCaCGgCCGCgCU- -5'
29826 5' -61.6 NC_006273.1 + 116870 0.67 0.727702
Target:  5'- uGGGUCGGCgucGCGguacguuggcCGUGUacgGGCGCGAu -3'
miRNA:   3'- -CCCGGUCGa--CGUa---------GCACGg--CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 115708 0.67 0.727702
Target:  5'- gGGGUaauGC-GCAUCuUGCCGGUGcCGAu -3'
miRNA:   3'- -CCCGgu-CGaCGUAGcACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 152623 0.67 0.709074
Target:  5'- uGGCCcGCUGCA-CG-GCCGcGCGUa- -3'
miRNA:   3'- cCCGGuCGACGUaGCaCGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 132759 0.67 0.709074
Target:  5'- aGGGaCgAGCUGUAcgaCGUGCCGG-GCa- -3'
miRNA:   3'- -CCC-GgUCGACGUa--GCACGGCCgCGcu -5'
29826 5' -61.6 NC_006273.1 + 141712 0.67 0.698727
Target:  5'- aGGGCgGGauccgccgccaUUGCGUCGUcccagcagggcgcGCCGGCGCc- -3'
miRNA:   3'- -CCCGgUC-----------GACGUAGCA-------------CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 42221 0.67 0.727702
Target:  5'- cGGG-CAGCguggGCuUCGgcgGCCGGUGCc- -3'
miRNA:   3'- -CCCgGUCGa---CGuAGCa--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 204720 0.67 0.727702
Target:  5'- cGGCCGGCcGCAggaagcCGc-CCGGCGCGu -3'
miRNA:   3'- cCCGGUCGaCGUa-----GCacGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 64574 0.67 0.736911
Target:  5'- aGGCCAGCUGCcaccagggcgacAUCGcucGCUuugGaGCGCGAg -3'
miRNA:   3'- cCCGGUCGACG------------UAGCa--CGG---C-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 148832 0.67 0.736911
Target:  5'- cGGCCGGCgGCgAUCGUcGCUGGCu--- -3'
miRNA:   3'- cCCGGUCGaCG-UAGCA-CGGCCGcgcu -5'
29826 5' -61.6 NC_006273.1 + 130406 0.67 0.690216
Target:  5'- uGGCuCAGCUGCAUCGcgaccgcGCCcgcgucaugauGGCGCu- -3'
miRNA:   3'- cCCG-GUCGACGUAGCa------CGG-----------CCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 103484 0.67 0.687372
Target:  5'- -cGCCAGCUGCGUggagGUGCCgaagaagcccgccaGGUGCGu -3'
miRNA:   3'- ccCGGUCGACGUAg---CACGG--------------CCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 126057 0.67 0.690216
Target:  5'- cGGCCGuucuacGCcgGCcgCGUGCCGGauccaGCGGu -3'
miRNA:   3'- cCCGGU------CGa-CGuaGCACGGCCg----CGCU- -5'
29826 5' -61.6 NC_006273.1 + 15655 0.67 0.690216
Target:  5'- cGGGCCcgcGGCUGCA-C-UGCCuGGUGaCGAc -3'
miRNA:   3'- -CCCGG---UCGACGUaGcACGG-CCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 147955 0.67 0.690216
Target:  5'- cGGCCuagAGCaGCGUagcgcCGUGuuGGCGCGc -3'
miRNA:   3'- cCCGG---UCGaCGUA-----GCACggCCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.