miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 147955 0.67 0.690216
Target:  5'- cGGCCuagAGCaGCGUagcgcCGUGuuGGCGCGc -3'
miRNA:   3'- cCCGG---UCGaCGUA-----GCACggCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 141712 0.67 0.698727
Target:  5'- aGGGCgGGauccgccgccaUUGCGUCGUcccagcagggcgcGCCGGCGCc- -3'
miRNA:   3'- -CCCGgUC-----------GACGUAGCA-------------CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 1972 0.67 0.736911
Target:  5'- gGGGCCGGCgacggggacGaCGUCGcGCCaGCgGCGAg -3'
miRNA:   3'- -CCCGGUCGa--------C-GUAGCaCGGcCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 175334 0.67 0.727702
Target:  5'- gGGGCaAGUuucgcuuuUGCggCGUacaggaGCCGGCGCGGg -3'
miRNA:   3'- -CCCGgUCG--------ACGuaGCA------CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 148832 0.67 0.736911
Target:  5'- cGGCCGGCgGCgAUCGUcGCUGGCu--- -3'
miRNA:   3'- cCCGGUCGaCG-UAGCA-CGGCCGcgcu -5'
29826 5' -61.6 NC_006273.1 + 64574 0.67 0.736911
Target:  5'- aGGCCAGCUGCcaccagggcgacAUCGcucGCUuugGaGCGCGAg -3'
miRNA:   3'- cCCGGUCGACG------------UAGCa--CGG---C-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 204720 0.67 0.727702
Target:  5'- cGGCCGGCcGCAggaagcCGc-CCGGCGCGu -3'
miRNA:   3'- cCCGGUCGaCGUa-----GCacGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 116870 0.67 0.727702
Target:  5'- uGGGUCGGCgucGCGguacguuggcCGUGUacgGGCGCGAu -3'
miRNA:   3'- -CCCGGUCGa--CGUa---------GCACGg--CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 115708 0.67 0.727702
Target:  5'- gGGGUaauGC-GCAUCuUGCCGGUGcCGAu -3'
miRNA:   3'- -CCCGgu-CGaCGUAGcACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 152623 0.67 0.709074
Target:  5'- uGGCCcGCUGCA-CG-GCCGcGCGUa- -3'
miRNA:   3'- cCCGGuCGACGUaGCaCGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 132759 0.67 0.709074
Target:  5'- aGGGaCgAGCUGUAcgaCGUGCCGG-GCa- -3'
miRNA:   3'- -CCC-GgUCGACGUa--GCACGGCCgCGcu -5'
29826 5' -61.6 NC_006273.1 + 147733 0.66 0.790212
Target:  5'- cGGGaCCAGCUGuCAUCucaGCUGGUaCGGc -3'
miRNA:   3'- -CCC-GGUCGAC-GUAGca-CGGCCGcGCU- -5'
29826 5' -61.6 NC_006273.1 + 194931 0.66 0.790212
Target:  5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3'
miRNA:   3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 148862 0.66 0.790212
Target:  5'- -cGCC-GCUGCcgCGUGacgaCGGCGaCGGu -3'
miRNA:   3'- ccCGGuCGACGuaGCACg---GCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 45445 0.66 0.790212
Target:  5'- cGGCCgacgAGCUGCAgacggcUGUGUCGcGCGUGu -3'
miRNA:   3'- cCCGG----UCGACGUa-----GCACGGC-CGCGCu -5'
29826 5' -61.6 NC_006273.1 + 194150 0.66 0.781599
Target:  5'- aGGCgAGCUGCGUgugCGUGCCGucuGUGUu- -3'
miRNA:   3'- cCCGgUCGACGUA---GCACGGC---CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 179918 0.66 0.781599
Target:  5'- cGGGUUAGgaaaUGCggCGUGCCGGC-Ca- -3'
miRNA:   3'- -CCCGGUCg---ACGuaGCACGGCCGcGcu -5'
29826 5' -61.6 NC_006273.1 + 149737 0.66 0.772867
Target:  5'- uGGGCCGGCUGCcggCGcUGUuaCGggaGCGCGu -3'
miRNA:   3'- -CCCGGUCGACGua-GC-ACG--GC---CGCGCu -5'
29826 5' -61.6 NC_006273.1 + 93623 0.66 0.790212
Target:  5'- cGGCCugcgcAGCUucgcGCAUCcacuggcGCCGGCGCGc -3'
miRNA:   3'- cCCGG-----UCGA----CGUAGca-----CGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 633 0.66 0.781599
Target:  5'- cGGcGCUuuCUGCG-CGcUGCCGGUGCGu -3'
miRNA:   3'- -CC-CGGucGACGUaGC-ACGGCCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.