Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29826 | 5' | -61.6 | NC_006273.1 | + | 38 | 0.66 | 0.790212 |
Target: 5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3' miRNA: 3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 234869 | 0.66 | 0.790212 |
Target: 5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3' miRNA: 3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 92295 | 0.66 | 0.746039 |
Target: 5'- aGGGCUcgcugaGGCUGUaAUCGcacaGCgCGGCGCGc -3' miRNA: 3'- -CCCGG------UCGACG-UAGCa---CG-GCCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 171158 | 0.66 | 0.743309 |
Target: 5'- cGGGCCAGgU-CAUCGgcgcuagcgcgcgaUGUCGGUGCa- -3' miRNA: 3'- -CCCGGUCgAcGUAGC--------------ACGGCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 190599 | 0.66 | 0.75508 |
Target: 5'- -cGCCGGCgccCAUCG-GCCG-CGCGAu -3' miRNA: 3'- ccCGGUCGac-GUAGCaCGGCcGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 194931 | 0.66 | 0.790212 |
Target: 5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3' miRNA: 3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 147733 | 0.66 | 0.790212 |
Target: 5'- cGGGaCCAGCUGuCAUCucaGCUGGUaCGGc -3' miRNA: 3'- -CCC-GGUCGAC-GUAGca-CGGCCGcGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 62257 | 0.66 | 0.789356 |
Target: 5'- uGGGCCuGCacgcucaUGCccuaCGUGUuguuuCGGCGCGAc -3' miRNA: 3'- -CCCGGuCG-------ACGua--GCACG-----GCCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 633 | 0.66 | 0.781599 |
Target: 5'- cGGcGCUuuCUGCG-CGcUGCCGGUGCGu -3' miRNA: 3'- -CC-CGGucGACGUaGC-ACGGCCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 179918 | 0.66 | 0.781599 |
Target: 5'- cGGGUUAGgaaaUGCggCGUGCCGGC-Ca- -3' miRNA: 3'- -CCCGGUCg---ACGuaGCACGGCCGcGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 149737 | 0.66 | 0.772867 |
Target: 5'- uGGGCCGGCUGCcggCGcUGUuaCGggaGCGCGu -3' miRNA: 3'- -CCCGGUCGACGua-GC-ACG--GC---CGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 45445 | 0.66 | 0.790212 |
Target: 5'- cGGCCgacgAGCUGCAgacggcUGUGUCGcGCGUGu -3' miRNA: 3'- cCCGG----UCGACGUa-----GCACGGC-CGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 62129 | 0.66 | 0.746039 |
Target: 5'- gGGGCCAGCaGCcgCuGguccGCCGG-GUGAu -3' miRNA: 3'- -CCCGGUCGaCGuaG-Ca---CGGCCgCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 33279 | 0.66 | 0.746039 |
Target: 5'- gGGGCCuugcGGCgGCAgCG-GuuGGCGUGGu -3' miRNA: 3'- -CCCGG----UCGaCGUaGCaCggCCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 194150 | 0.66 | 0.781599 |
Target: 5'- aGGCgAGCUGCGUgugCGUGCCGucuGUGUu- -3' miRNA: 3'- cCCGgUCGACGUA---GCACGGC---CGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 93623 | 0.66 | 0.790212 |
Target: 5'- cGGCCugcgcAGCUucgcGCAUCcacuggcGCCGGCGCGc -3' miRNA: 3'- cCCGG-----UCGA----CGUAGca-----CGGCCGCGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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