miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 130799 1.09 0.001356
Target:  5'- uGGGCCAGCUGCAUCGUGCCGGCGCGAc -3'
miRNA:   3'- -CCCGGUCGACGUAGCACGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 87491 0.8 0.15248
Target:  5'- aGGCCAGC-GCAgCGUaGCUGGCGCGAu -3'
miRNA:   3'- cCCGGUCGaCGUaGCA-CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 31659 0.79 0.163825
Target:  5'- aGGCCAGCUGCGUCGUcaaggaCGGCGUGu -3'
miRNA:   3'- cCCGGUCGACGUAGCAcg----GCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 108692 0.75 0.290794
Target:  5'- cGGCU-GCUGCGUCGUGaCGGCGCc- -3'
miRNA:   3'- cCCGGuCGACGUAGCACgGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 119697 0.75 0.293347
Target:  5'- aGGCCAGCUGCuccagggcgucuaccAgCGUcagcgggauggcGCCGGCGCGAa -3'
miRNA:   3'- cCCGGUCGACG---------------UaGCA------------CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 167186 0.75 0.29721
Target:  5'- cGGGCgCAGCgGCcgCGgagGCCGGCGUa- -3'
miRNA:   3'- -CCCG-GUCGaCGuaGCa--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 230493 0.74 0.323968
Target:  5'- cGGCCGGCUG-GUCG-GUCGGCGCu- -3'
miRNA:   3'- cCCGGUCGACgUAGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 187278 0.74 0.345188
Target:  5'- aGGGUCAcGCUgaccaugcgGCGUCGuUGCCGGgGCGGc -3'
miRNA:   3'- -CCCGGU-CGA---------CGUAGC-ACGGCCgCGCU- -5'
29826 5' -61.6 NC_006273.1 + 31745 0.72 0.431205
Target:  5'- cGGGUCGGCUG-GUCGgGCCGuCGCGGa -3'
miRNA:   3'- -CCCGGUCGACgUAGCaCGGCcGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 155905 0.72 0.431205
Target:  5'- uGGGUUucGCaGCggCGUGCCGuGCGCGAa -3'
miRNA:   3'- -CCCGGu-CGaCGuaGCACGGC-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 55949 0.72 0.448147
Target:  5'- uGGCCAGCUgagacgcaGCAcCGUGCCGcugaCGCGAc -3'
miRNA:   3'- cCCGGUCGA--------CGUaGCACGGCc---GCGCU- -5'
29826 5' -61.6 NC_006273.1 + 197124 0.71 0.464578
Target:  5'- cGGGuCCGGCgGCGUCGgggaccgUGCCGcGCGCc- -3'
miRNA:   3'- -CCC-GGUCGaCGUAGC-------ACGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 2231 0.71 0.464578
Target:  5'- cGGGuCCGGCgGCGUCGgggaccgUGCCGcGCGCc- -3'
miRNA:   3'- -CCC-GGUCGaCGUAGC-------ACGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 146784 0.71 0.465452
Target:  5'- aGGGCUugaAGaCcGCAggCGUGCCGGCGCc- -3'
miRNA:   3'- -CCCGG---UC-GaCGUa-GCACGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 41051 0.71 0.465452
Target:  5'- uGGCgGGCUGUugCGUGCCGGgGaCGGg -3'
miRNA:   3'- cCCGgUCGACGuaGCACGGCCgC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 1113 0.71 0.465452
Target:  5'- uGGCgGGCUGUugCGUGCCGGgGaCGGg -3'
miRNA:   3'- cCCGgUCGACGuaGCACGGCCgC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 158227 0.71 0.483098
Target:  5'- aGGcGCgGGCgcGCGUCG-GCCGGCGaCGGc -3'
miRNA:   3'- -CC-CGgUCGa-CGUAGCaCGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 34428 0.71 0.483098
Target:  5'- cGGCCAGagcgaUGCGUU-UGgCGGCGCGAc -3'
miRNA:   3'- cCCGGUCg----ACGUAGcACgGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 30682 0.7 0.51015
Target:  5'- cGGCCGGCcGCG--GUGCCGGCGg-- -3'
miRNA:   3'- cCCGGUCGaCGUagCACGGCCGCgcu -5'
29826 5' -61.6 NC_006273.1 + 21845 0.7 0.51015
Target:  5'- cGGGUCuGCUGCccUCGUGCgaggaggaCGaGCGCGAa -3'
miRNA:   3'- -CCCGGuCGACGu-AGCACG--------GC-CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.