Results 41 - 60 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
29826 | 5' | -61.6 | NC_006273.1 | + | 178960 | 0.68 | 0.665456 |
Target: 5'- cGGCUagAGCguggGCcgCGUGCCugggaacgugcgcacGGCGCGGu -3' miRNA: 3'- cCCGG--UCGa---CGuaGCACGG---------------CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 56356 | 0.68 | 0.670234 |
Target: 5'- -uGCCAGCUGaaaccgcCGUCGUcuccGCCGGCGUu- -3' miRNA: 3'- ccCGGUCGAC-------GUAGCA----CGGCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 36479 | 0.68 | 0.671188 |
Target: 5'- cGGGCUGGCgUGCuguuuucCGUGUugccgacggCGGCGCGGu -3' miRNA: 3'- -CCCGGUCG-ACGua-----GCACG---------GCCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 102546 | 0.68 | 0.671188 |
Target: 5'- gGGGuCCAGCaGCGU-GUGCaguuCGGCGuCGAg -3' miRNA: 3'- -CCC-GGUCGaCGUAgCACG----GCCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 81956 | 0.68 | 0.671188 |
Target: 5'- -uGCCGGC-GCccgcCGUGCCGGUGaCGAg -3' miRNA: 3'- ccCGGUCGaCGua--GCACGGCCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 94590 | 0.68 | 0.68072 |
Target: 5'- cGGGCUuuaaaGGCaaaUGCAccUCGUcGCCGGCGUc- -3' miRNA: 3'- -CCCGG-----UCG---ACGU--AGCA-CGGCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 103484 | 0.67 | 0.687372 |
Target: 5'- -cGCCAGCUGCGUggagGUGCCgaagaagcccgccaGGUGCGu -3' miRNA: 3'- ccCGGUCGACGUAg---CACGG--------------CCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 126057 | 0.67 | 0.690216 |
Target: 5'- cGGCCGuucuacGCcgGCcgCGUGCCGGauccaGCGGu -3' miRNA: 3'- cCCGGU------CGa-CGuaGCACGGCCg----CGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 130406 | 0.67 | 0.690216 |
Target: 5'- uGGCuCAGCUGCAUCGcgaccgcGCCcgcgucaugauGGCGCu- -3' miRNA: 3'- cCCG-GUCGACGUAGCa------CGG-----------CCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 147955 | 0.67 | 0.690216 |
Target: 5'- cGGCCuagAGCaGCGUagcgcCGUGuuGGCGCGc -3' miRNA: 3'- cCCGG---UCGaCGUA-----GCACggCCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 15655 | 0.67 | 0.690216 |
Target: 5'- cGGGCCcgcGGCUGCA-C-UGCCuGGUGaCGAc -3' miRNA: 3'- -CCCGG---UCGACGUaGcACGG-CCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 141712 | 0.67 | 0.698727 |
Target: 5'- aGGGCgGGauccgccgccaUUGCGUCGUcccagcagggcgcGCCGGCGCc- -3' miRNA: 3'- -CCCGgUC-----------GACGUAGCA-------------CGGCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 140510 | 0.67 | 0.69967 |
Target: 5'- cGGGaCCGaCUGcCGUCGaGCCGGgGCGu -3' miRNA: 3'- -CCC-GGUcGAC-GUAGCaCGGCCgCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 18651 | 0.67 | 0.708136 |
Target: 5'- cGGGCCuuuugugcccAGCgGCAUgGUGCUgcucgacaaguuuGGCGUGGu -3' miRNA: 3'- -CCCGG----------UCGaCGUAgCACGG-------------CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 132759 | 0.67 | 0.709074 |
Target: 5'- aGGGaCgAGCUGUAcgaCGUGCCGG-GCa- -3' miRNA: 3'- -CCC-GgUCGACGUa--GCACGGCCgCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 152623 | 0.67 | 0.709074 |
Target: 5'- uGGCCcGCUGCA-CG-GCCGcGCGUa- -3' miRNA: 3'- cCCGGuCGACGUaGCaCGGC-CGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 118619 | 0.67 | 0.709074 |
Target: 5'- -cGCCGGCUGgAgagCGagagGCCGGCGUa- -3' miRNA: 3'- ccCGGUCGACgUa--GCa---CGGCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 147552 | 0.67 | 0.709074 |
Target: 5'- aGGCUGGCgGCGUCG-GCgGGagcaGCGGg -3' miRNA: 3'- cCCGGUCGaCGUAGCaCGgCCg---CGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 8843 | 0.67 | 0.709074 |
Target: 5'- cGGaGCCGGCUcagaGCGgaccacgguugaUUGUGCCcggaccgugGGCGCGAc -3' miRNA: 3'- -CC-CGGUCGA----CGU------------AGCACGG---------CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 213130 | 0.67 | 0.709074 |
Target: 5'- cGGCgGaGCcGCGUCGcucGCCGGCGCc- -3' miRNA: 3'- cCCGgU-CGaCGUAGCa--CGGCCGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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