miRNA display CGI


Results 61 - 80 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 82832 0.67 0.71842
Target:  5'- uGGGCUAcuGCUGCAggugGCCGaGCGCc- -3'
miRNA:   3'- -CCCGGU--CGACGUagcaCGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 115649 0.67 0.71842
Target:  5'- -aGCCAGUUcGCcuuUCGcGCCGGCGCc- -3'
miRNA:   3'- ccCGGUCGA-CGu--AGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 42221 0.67 0.727702
Target:  5'- cGGG-CAGCguggGCuUCGgcgGCCGGUGCc- -3'
miRNA:   3'- -CCCgGUCGa---CGuAGCa--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 190037 0.67 0.727702
Target:  5'- gGGGuCCAGU----UCG-GCCGGCGCGc -3'
miRNA:   3'- -CCC-GGUCGacguAGCaCGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 115708 0.67 0.727702
Target:  5'- gGGGUaauGC-GCAUCuUGCCGGUGcCGAu -3'
miRNA:   3'- -CCCGgu-CGaCGUAGcACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 116870 0.67 0.727702
Target:  5'- uGGGUCGGCgucGCGguacguuggcCGUGUacgGGCGCGAu -3'
miRNA:   3'- -CCCGGUCGa--CGUa---------GCACGg--CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 204720 0.67 0.727702
Target:  5'- cGGCCGGCcGCAggaagcCGc-CCGGCGCGu -3'
miRNA:   3'- cCCGGUCGaCGUa-----GCacGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 175334 0.67 0.727702
Target:  5'- gGGGCaAGUuucgcuuuUGCggCGUacaggaGCCGGCGCGGg -3'
miRNA:   3'- -CCCGgUCG--------ACGuaGCA------CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 64574 0.67 0.736911
Target:  5'- aGGCCAGCUGCcaccagggcgacAUCGcucGCUuugGaGCGCGAg -3'
miRNA:   3'- cCCGGUCGACG------------UAGCa--CGG---C-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 148832 0.67 0.736911
Target:  5'- cGGCCGGCgGCgAUCGUcGCUGGCu--- -3'
miRNA:   3'- cCCGGUCGaCG-UAGCA-CGGCCGcgcu -5'
29826 5' -61.6 NC_006273.1 + 1972 0.67 0.736911
Target:  5'- gGGGCCGGCgacggggacGaCGUCGcGCCaGCgGCGAg -3'
miRNA:   3'- -CCCGGUCGa--------C-GUAGCaCGGcCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 171158 0.66 0.743309
Target:  5'- cGGGCCAGgU-CAUCGgcgcuagcgcgcgaUGUCGGUGCa- -3'
miRNA:   3'- -CCCGGUCgAcGUAGC--------------ACGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 92295 0.66 0.746039
Target:  5'- aGGGCUcgcugaGGCUGUaAUCGcacaGCgCGGCGCGc -3'
miRNA:   3'- -CCCGG------UCGACG-UAGCa---CG-GCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 62129 0.66 0.746039
Target:  5'- gGGGCCAGCaGCcgCuGguccGCCGG-GUGAu -3'
miRNA:   3'- -CCCGGUCGaCGuaG-Ca---CGGCCgCGCU- -5'
29826 5' -61.6 NC_006273.1 + 33279 0.66 0.746039
Target:  5'- gGGGCCuugcGGCgGCAgCG-GuuGGCGUGGu -3'
miRNA:   3'- -CCCGG----UCGaCGUaGCaCggCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 90626 0.66 0.75508
Target:  5'- cGGCC-GCcGCGUCGUGCCucCGCa- -3'
miRNA:   3'- cCCGGuCGaCGUAGCACGGccGCGcu -5'
29826 5' -61.6 NC_006273.1 + 92123 0.66 0.75508
Target:  5'- aGGCCGGCUacggggaaacGCG-CGUGCgGGuCGCa- -3'
miRNA:   3'- cCCGGUCGA----------CGUaGCACGgCC-GCGcu -5'
29826 5' -61.6 NC_006273.1 + 190599 0.66 0.75508
Target:  5'- -cGCCGGCgccCAUCG-GCCG-CGCGAu -3'
miRNA:   3'- ccCGGUCGac-GUAGCaCGGCcGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 179718 0.66 0.764025
Target:  5'- aGGGCCuGC-GCAacuaCGcGCCGcuGCGCGAa -3'
miRNA:   3'- -CCCGGuCGaCGUa---GCaCGGC--CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 173504 0.66 0.764025
Target:  5'- cGGuCCAGCUGU-UCGUGCaacugcucggCGGCGUa- -3'
miRNA:   3'- cCC-GGUCGACGuAGCACG----------GCCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.