miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 38 0.66 0.790212
Target:  5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3'
miRNA:   3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 633 0.66 0.781599
Target:  5'- cGGcGCUuuCUGCG-CGcUGCCGGUGCGu -3'
miRNA:   3'- -CC-CGGucGACGUaGC-ACGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 1113 0.71 0.465452
Target:  5'- uGGCgGGCUGUugCGUGCCGGgGaCGGg -3'
miRNA:   3'- cCCGgUCGACGuaGCACGGCCgC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 1972 0.67 0.736911
Target:  5'- gGGGCCGGCgacggggacGaCGUCGcGCCaGCgGCGAg -3'
miRNA:   3'- -CCCGGUCGa--------C-GUAGCaCGGcCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 2231 0.71 0.464578
Target:  5'- cGGGuCCGGCgGCGUCGgggaccgUGCCGcGCGCc- -3'
miRNA:   3'- -CCC-GGUCGaCGUAGC-------ACGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 2369 0.69 0.584964
Target:  5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3'
miRNA:   3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 8843 0.67 0.709074
Target:  5'- cGGaGCCGGCUcagaGCGgaccacgguugaUUGUGCCcggaccgugGGCGCGAc -3'
miRNA:   3'- -CC-CGGUCGA----CGU------------AGCACGG---------CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 15655 0.67 0.690216
Target:  5'- cGGGCCcgcGGCUGCA-C-UGCCuGGUGaCGAc -3'
miRNA:   3'- -CCCGG---UCGACGUaGcACGG-CCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 18651 0.67 0.708136
Target:  5'- cGGGCCuuuugugcccAGCgGCAUgGUGCUgcucgacaaguuuGGCGUGGu -3'
miRNA:   3'- -CCCGG----------UCGaCGUAgCACGG-------------CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 21516 0.69 0.60407
Target:  5'- -cGCCAGCUGUuacAUCGccgGCgGGCGCu- -3'
miRNA:   3'- ccCGGUCGACG---UAGCa--CGgCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 21845 0.7 0.51015
Target:  5'- cGGGUCuGCUGCccUCGUGCgaggaggaCGaGCGCGAa -3'
miRNA:   3'- -CCCGGuCGACGu-AGCACG--------GC-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 30682 0.7 0.51015
Target:  5'- cGGCCGGCcGCG--GUGCCGGCGg-- -3'
miRNA:   3'- cCCGGUCGaCGUagCACGGCCGCgcu -5'
29826 5' -61.6 NC_006273.1 + 31659 0.79 0.163825
Target:  5'- aGGCCAGCUGCGUCGUcaaggaCGGCGUGu -3'
miRNA:   3'- cCCGGUCGACGUAGCAcg----GCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 31745 0.72 0.431205
Target:  5'- cGGGUCGGCUG-GUCGgGCCGuCGCGGa -3'
miRNA:   3'- -CCCGGUCGACgUAGCaCGGCcGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 33279 0.66 0.746039
Target:  5'- gGGGCCuugcGGCgGCAgCG-GuuGGCGUGGu -3'
miRNA:   3'- -CCCGG----UCGaCGUaGCaCggCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 33783 0.7 0.546217
Target:  5'- aGGGCCAGCacgGCGUUGgagGCCaGGUacauggcguagccGCGAc -3'
miRNA:   3'- -CCCGGUCGa--CGUAGCa--CGG-CCG-------------CGCU- -5'
29826 5' -61.6 NC_006273.1 + 34428 0.71 0.483098
Target:  5'- cGGCCAGagcgaUGCGUU-UGgCGGCGCGAc -3'
miRNA:   3'- cCCGGUCg----ACGUAGcACgGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 36479 0.68 0.671188
Target:  5'- cGGGCUGGCgUGCuguuuucCGUGUugccgacggCGGCGCGGu -3'
miRNA:   3'- -CCCGGUCG-ACGua-----GCACG---------GCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 40571 0.66 0.781599
Target:  5'- cGGcGCUuuCUGCG-CGcUGCCGGUGCGu -3'
miRNA:   3'- -CC-CGGucGACGUaGC-ACGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 41051 0.71 0.465452
Target:  5'- uGGCgGGCUGUugCGUGCCGGgGaCGGg -3'
miRNA:   3'- cCCGgUCGACGuaGCACGGCCgC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.