miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 42221 0.67 0.727702
Target:  5'- cGGG-CAGCguggGCuUCGgcgGCCGGUGCc- -3'
miRNA:   3'- -CCCgGUCGa---CGuAGCa--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 45445 0.66 0.790212
Target:  5'- cGGCCgacgAGCUGCAgacggcUGUGUCGcGCGUGu -3'
miRNA:   3'- cCCGG----UCGACGUa-----GCACGGC-CGCGCu -5'
29826 5' -61.6 NC_006273.1 + 55949 0.72 0.448147
Target:  5'- uGGCCAGCUgagacgcaGCAcCGUGCCGcugaCGCGAc -3'
miRNA:   3'- cCCGGUCGA--------CGUaGCACGGCc---GCGCU- -5'
29826 5' -61.6 NC_006273.1 + 56356 0.68 0.670234
Target:  5'- -uGCCAGCUGaaaccgcCGUCGUcuccGCCGGCGUu- -3'
miRNA:   3'- ccCGGUCGAC-------GUAGCA----CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 62129 0.66 0.746039
Target:  5'- gGGGCCAGCaGCcgCuGguccGCCGG-GUGAu -3'
miRNA:   3'- -CCCGGUCGaCGuaG-Ca---CGGCCgCGCU- -5'
29826 5' -61.6 NC_006273.1 + 62257 0.66 0.789356
Target:  5'- uGGGCCuGCacgcucaUGCccuaCGUGUuguuuCGGCGCGAc -3'
miRNA:   3'- -CCCGGuCG-------ACGua--GCACG-----GCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 63148 0.7 0.556542
Target:  5'- gGGGCguGCaccuguuuaccuUGCGUcCGUcucgcggcgcgGCCGGCGCGGc -3'
miRNA:   3'- -CCCGguCG------------ACGUA-GCA-----------CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 64574 0.67 0.736911
Target:  5'- aGGCCAGCUGCcaccagggcgacAUCGcucGCUuugGaGCGCGAg -3'
miRNA:   3'- cCCGGUCGACG------------UAGCa--CGG---C-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 76618 0.69 0.60407
Target:  5'- cGGCCugAGCgGCGUCGacgGCgcacUGGCGCGAc -3'
miRNA:   3'- cCCGG--UCGaCGUAGCa--CG----GCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 81956 0.68 0.671188
Target:  5'- -uGCCGGC-GCccgcCGUGCCGGUGaCGAg -3'
miRNA:   3'- ccCGGUCGaCGua--GCACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 82832 0.67 0.71842
Target:  5'- uGGGCUAcuGCUGCAggugGCCGaGCGCc- -3'
miRNA:   3'- -CCCGGU--CGACGUagcaCGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 87491 0.8 0.15248
Target:  5'- aGGCCAGC-GCAgCGUaGCUGGCGCGAu -3'
miRNA:   3'- cCCGGUCGaCGUaGCA-CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 90626 0.66 0.75508
Target:  5'- cGGCC-GCcGCGUCGUGCCucCGCa- -3'
miRNA:   3'- cCCGGuCGaCGUAGCACGGccGCGcu -5'
29826 5' -61.6 NC_006273.1 + 92123 0.66 0.75508
Target:  5'- aGGCCGGCUacggggaaacGCG-CGUGCgGGuCGCa- -3'
miRNA:   3'- cCCGGUCGA----------CGUaGCACGgCC-GCGcu -5'
29826 5' -61.6 NC_006273.1 + 92295 0.66 0.746039
Target:  5'- aGGGCUcgcugaGGCUGUaAUCGcacaGCgCGGCGCGc -3'
miRNA:   3'- -CCCGG------UCGACG-UAGCa---CG-GCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 93623 0.66 0.790212
Target:  5'- cGGCCugcgcAGCUucgcGCAUCcacuggcGCCGGCGCGc -3'
miRNA:   3'- cCCGG-----UCGA----CGUAGca-----CGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 94139 0.7 0.537814
Target:  5'- -aGCCuGCUGCGUgGUgaGCCGGUGCu- -3'
miRNA:   3'- ccCGGuCGACGUAgCA--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 94590 0.68 0.68072
Target:  5'- cGGGCUuuaaaGGCaaaUGCAccUCGUcGCCGGCGUc- -3'
miRNA:   3'- -CCCGG-----UCG---ACGU--AGCA-CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 102546 0.68 0.671188
Target:  5'- gGGGuCCAGCaGCGU-GUGCaguuCGGCGuCGAg -3'
miRNA:   3'- -CCC-GGUCGaCGUAgCACG----GCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 103484 0.67 0.687372
Target:  5'- -cGCCAGCUGCGUggagGUGCCgaagaagcccgccaGGUGCGu -3'
miRNA:   3'- ccCGGUCGACGUAg---CACGG--------------CCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.