miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 108692 0.75 0.290794
Target:  5'- cGGCU-GCUGCGUCGUGaCGGCGCc- -3'
miRNA:   3'- cCCGGuCGACGUAGCACgGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 115649 0.67 0.71842
Target:  5'- -aGCCAGUUcGCcuuUCGcGCCGGCGCc- -3'
miRNA:   3'- ccCGGUCGA-CGu--AGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 115708 0.67 0.727702
Target:  5'- gGGGUaauGC-GCAUCuUGCCGGUGcCGAu -3'
miRNA:   3'- -CCCGgu-CGaCGUAGcACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 116870 0.67 0.727702
Target:  5'- uGGGUCGGCgucGCGguacguuggcCGUGUacgGGCGCGAu -3'
miRNA:   3'- -CCCGGUCGa--CGUa---------GCACGg--CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 118619 0.67 0.709074
Target:  5'- -cGCCGGCUGgAgagCGagagGCCGGCGUa- -3'
miRNA:   3'- ccCGGUCGACgUa--GCa---CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 119697 0.75 0.293347
Target:  5'- aGGCCAGCUGCuccagggcgucuaccAgCGUcagcgggauggcGCCGGCGCGAa -3'
miRNA:   3'- cCCGGUCGACG---------------UaGCA------------CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 120572 0.68 0.652048
Target:  5'- uGGCCcgGGCaagGCGUCuUGCCGGUgGCGGc -3'
miRNA:   3'- cCCGG--UCGa--CGUAGcACGGCCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 125873 0.68 0.62325
Target:  5'- cGGCCAGCaUGCAggaGgcacGCCcGCGCGGg -3'
miRNA:   3'- cCCGGUCG-ACGUag-Ca---CGGcCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 126057 0.67 0.690216
Target:  5'- cGGCCGuucuacGCcgGCcgCGUGCCGGauccaGCGGu -3'
miRNA:   3'- cCCGGU------CGa-CGuaGCACGGCCg----CGCU- -5'
29826 5' -61.6 NC_006273.1 + 130406 0.67 0.690216
Target:  5'- uGGCuCAGCUGCAUCGcgaccgcGCCcgcgucaugauGGCGCu- -3'
miRNA:   3'- cCCG-GUCGACGUAGCa------CGG-----------CCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 130799 1.09 0.001356
Target:  5'- uGGGCCAGCUGCAUCGUGCCGGCGCGAc -3'
miRNA:   3'- -CCCGGUCGACGUAGCACGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 132759 0.67 0.709074
Target:  5'- aGGGaCgAGCUGUAcgaCGUGCCGG-GCa- -3'
miRNA:   3'- -CCC-GgUCGACGUa--GCACGGCCgCGcu -5'
29826 5' -61.6 NC_006273.1 + 140510 0.67 0.69967
Target:  5'- cGGGaCCGaCUGcCGUCGaGCCGGgGCGu -3'
miRNA:   3'- -CCC-GGUcGAC-GUAGCaCGGCCgCGCu -5'
29826 5' -61.6 NC_006273.1 + 141712 0.67 0.698727
Target:  5'- aGGGCgGGauccgccgccaUUGCGUCGUcccagcagggcgcGCCGGCGCc- -3'
miRNA:   3'- -CCCGgUC-----------GACGUAGCA-------------CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 146784 0.71 0.465452
Target:  5'- aGGGCUugaAGaCcGCAggCGUGCCGGCGCc- -3'
miRNA:   3'- -CCCGG---UC-GaCGUa-GCACGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 147552 0.67 0.709074
Target:  5'- aGGCUGGCgGCGUCG-GCgGGagcaGCGGg -3'
miRNA:   3'- cCCGGUCGaCGUAGCaCGgCCg---CGCU- -5'
29826 5' -61.6 NC_006273.1 + 147733 0.66 0.790212
Target:  5'- cGGGaCCAGCUGuCAUCucaGCUGGUaCGGc -3'
miRNA:   3'- -CCC-GGUCGAC-GUAGca-CGGCCGcGCU- -5'
29826 5' -61.6 NC_006273.1 + 147955 0.67 0.690216
Target:  5'- cGGCCuagAGCaGCGUagcgcCGUGuuGGCGCGc -3'
miRNA:   3'- cCCGG---UCGaCGUA-----GCACggCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 148832 0.67 0.736911
Target:  5'- cGGCCGGCgGCgAUCGUcGCUGGCu--- -3'
miRNA:   3'- cCCGGUCGaCG-UAGCA-CGGCCGcgcu -5'
29826 5' -61.6 NC_006273.1 + 148862 0.66 0.790212
Target:  5'- -cGCC-GCUGCcgCGUGacgaCGGCGaCGGu -3'
miRNA:   3'- ccCGGuCGACGuaGCACg---GCCGC-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.