miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 234869 0.66 0.790212
Target:  5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3'
miRNA:   3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 234088 0.66 0.781599
Target:  5'- aGGCgAGCUGCGUgugCGUGCCGucuGUGUu- -3'
miRNA:   3'- cCCGgUCGACGUA---GCACGGC---CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 230493 0.74 0.323968
Target:  5'- cGGCCGGCUG-GUCG-GUCGGCGCu- -3'
miRNA:   3'- cCCGGUCGACgUAGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 223531 0.68 0.642454
Target:  5'- aGGaCUGGC-GCAUgGUGCCGcGCGUGGa -3'
miRNA:   3'- cCC-GGUCGaCGUAgCACGGC-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 213130 0.67 0.709074
Target:  5'- cGGCgGaGCcGCGUCGcucGCCGGCGCc- -3'
miRNA:   3'- cCCGgU-CGaCGUAGCa--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 206822 0.68 0.655883
Target:  5'- uGGCCGGCUGCAugcacauccacgcguUCGcGCaguGGCGUGc -3'
miRNA:   3'- cCCGGUCGACGU---------------AGCaCGg--CCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 204720 0.67 0.727702
Target:  5'- cGGCCGGCcGCAggaagcCGc-CCGGCGCGu -3'
miRNA:   3'- cCCGGUCGaCGUa-----GCacGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 197262 0.69 0.584964
Target:  5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3'
miRNA:   3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 197124 0.71 0.464578
Target:  5'- cGGGuCCGGCgGCGUCGgggaccgUGCCGcGCGCc- -3'
miRNA:   3'- -CCC-GGUCGaCGUAGC-------ACGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 194931 0.66 0.790212
Target:  5'- gGGGCgCGGCgggGUGggugUGUGCCgGGUGUGGc -3'
miRNA:   3'- -CCCG-GUCGa--CGUa---GCACGG-CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 194150 0.66 0.781599
Target:  5'- aGGCgAGCUGCGUgugCGUGCCGucuGUGUu- -3'
miRNA:   3'- cCCGgUCGACGUA---GCACGGC---CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 190599 0.66 0.75508
Target:  5'- -cGCCGGCgccCAUCG-GCCG-CGCGAu -3'
miRNA:   3'- ccCGGUCGac-GUAGCaCGGCcGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 190037 0.67 0.727702
Target:  5'- gGGGuCCAGU----UCG-GCCGGCGCGc -3'
miRNA:   3'- -CCC-GGUCGacguAGCaCGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 189944 0.7 0.528532
Target:  5'- -aGCCGuCUGCAgcUCGUcgGCCGGCGUGGg -3'
miRNA:   3'- ccCGGUcGACGU--AGCA--CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 187278 0.74 0.345188
Target:  5'- aGGGUCAcGCUgaccaugcgGCGUCGuUGCCGGgGCGGc -3'
miRNA:   3'- -CCCGGU-CGA---------CGUAGC-ACGGCCgCGCU- -5'
29826 5' -61.6 NC_006273.1 + 185288 0.7 0.556542
Target:  5'- cGGCC-GCUcaaaCGUCGgGCCGGCGUGGu -3'
miRNA:   3'- cCCGGuCGAc---GUAGCaCGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 179918 0.66 0.781599
Target:  5'- cGGGUUAGgaaaUGCggCGUGCCGGC-Ca- -3'
miRNA:   3'- -CCCGGUCg---ACGuaGCACGGCCGcGcu -5'
29826 5' -61.6 NC_006273.1 + 179718 0.66 0.764025
Target:  5'- aGGGCCuGC-GCAacuaCGcGCCGcuGCGCGAa -3'
miRNA:   3'- -CCCGGuCGaCGUa---GCaCGGC--CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 178960 0.68 0.665456
Target:  5'- cGGCUagAGCguggGCcgCGUGCCugggaacgugcgcacGGCGCGGu -3'
miRNA:   3'- cCCGG--UCGa---CGuaGCACGG---------------CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 177257 0.66 0.781599
Target:  5'- aGGCC-GCUGCG-CGUGCCcGUgGUGAa -3'
miRNA:   3'- cCCGGuCGACGUaGCACGGcCG-CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.