miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 175334 0.67 0.727702
Target:  5'- gGGGCaAGUuucgcuuuUGCggCGUacaggaGCCGGCGCGGg -3'
miRNA:   3'- -CCCGgUCG--------ACGuaGCA------CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 173504 0.66 0.764025
Target:  5'- cGGuCCAGCUGU-UCGUGCaacugcucggCGGCGUa- -3'
miRNA:   3'- cCC-GGUCGACGuAGCACG----------GCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 171158 0.66 0.743309
Target:  5'- cGGGCCAGgU-CAUCGgcgcuagcgcgcgaUGUCGGUGCa- -3'
miRNA:   3'- -CCCGGUCgAcGUAGC--------------ACGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 170855 0.7 0.528532
Target:  5'- aGGCCGGCgGCAgggacaccgaugUCGaGCCGGCggGCGGg -3'
miRNA:   3'- cCCGGUCGaCGU------------AGCaCGGCCG--CGCU- -5'
29826 5' -61.6 NC_006273.1 + 167673 0.7 0.556542
Target:  5'- gGGGUCGGCcGCcguucGUCGUcacggGgCGGCGCGAg -3'
miRNA:   3'- -CCCGGUCGaCG-----UAGCA-----CgGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 167186 0.75 0.29721
Target:  5'- cGGGCgCAGCgGCcgCGgagGCCGGCGUa- -3'
miRNA:   3'- -CCCG-GUCGaCGuaGCa--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 167152 0.68 0.652048
Target:  5'- cGGGCC-GCUGgaaGUCG-GCgGGCGgGGg -3'
miRNA:   3'- -CCCGGuCGACg--UAGCaCGgCCGCgCU- -5'
29826 5' -61.6 NC_006273.1 + 164449 0.66 0.780731
Target:  5'- cGGCCgcGGCcGC-UCGaugacgaUGUCGGCGCGGc -3'
miRNA:   3'- cCCGG--UCGaCGuAGC-------ACGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 161672 0.69 0.594505
Target:  5'- gGGGUCGGC-GC-UC-UGCCGGCuGCGGc -3'
miRNA:   3'- -CCCGGUCGaCGuAGcACGGCCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 159913 0.68 0.642454
Target:  5'- cGGCgGGUccUGCGUUGcuacUGCCGGCGaCGGc -3'
miRNA:   3'- cCCGgUCG--ACGUAGC----ACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 158312 0.7 0.556542
Target:  5'- uGGCCAGCUcGCGUUG-GC-GGCGCu- -3'
miRNA:   3'- cCCGGUCGA-CGUAGCaCGgCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 158227 0.71 0.483098
Target:  5'- aGGcGCgGGCgcGCGUCG-GCCGGCGaCGGc -3'
miRNA:   3'- -CC-CGgUCGa-CGUAGCaCGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 155905 0.72 0.431205
Target:  5'- uGGGUUucGCaGCggCGUGCCGuGCGCGAa -3'
miRNA:   3'- -CCCGGu-CGaCGuaGCACGGC-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 153366 0.7 0.537814
Target:  5'- aGGCCGGCgGCAcgcgCGUGCCcuGCGuCGAc -3'
miRNA:   3'- cCCGGUCGaCGUa---GCACGGc-CGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 152623 0.67 0.709074
Target:  5'- uGGCCcGCUGCA-CG-GCCGcGCGUa- -3'
miRNA:   3'- cCCGGuCGACGUaGCaCGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 149737 0.66 0.772867
Target:  5'- uGGGCCGGCUGCcggCGcUGUuaCGggaGCGCGu -3'
miRNA:   3'- -CCCGGUCGACGua-GC-ACG--GC---CGCGCu -5'
29826 5' -61.6 NC_006273.1 + 148862 0.66 0.790212
Target:  5'- -cGCC-GCUGCcgCGUGacgaCGGCGaCGGu -3'
miRNA:   3'- ccCGGuCGACGuaGCACg---GCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 148832 0.67 0.736911
Target:  5'- cGGCCGGCgGCgAUCGUcGCUGGCu--- -3'
miRNA:   3'- cCCGGUCGaCG-UAGCA-CGGCCGcgcu -5'
29826 5' -61.6 NC_006273.1 + 147955 0.67 0.690216
Target:  5'- cGGCCuagAGCaGCGUagcgcCGUGuuGGCGCGc -3'
miRNA:   3'- cCCGG---UCGaCGUA-----GCACggCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 147733 0.66 0.790212
Target:  5'- cGGGaCCAGCUGuCAUCucaGCUGGUaCGGc -3'
miRNA:   3'- -CCC-GGUCGAC-GUAGca-CGGCCGcGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.