miRNA display CGI


Results 1 - 20 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 102546 0.68 0.671188
Target:  5'- gGGGuCCAGCaGCGU-GUGCaguuCGGCGuCGAg -3'
miRNA:   3'- -CCC-GGUCGaCGUAgCACG----GCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 197262 0.69 0.584964
Target:  5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3'
miRNA:   3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 161672 0.69 0.594505
Target:  5'- gGGGUCGGC-GC-UC-UGCCGGCuGCGGc -3'
miRNA:   3'- -CCCGGUCGaCGuAGcACGGCCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 21516 0.69 0.60407
Target:  5'- -cGCCAGCUGUuacAUCGccgGCgGGCGCu- -3'
miRNA:   3'- ccCGGUCGACG---UAGCa--CGgCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 76618 0.69 0.60407
Target:  5'- cGGCCugAGCgGCGUCGacgGCgcacUGGCGCGAc -3'
miRNA:   3'- cCCGG--UCGaCGUAGCa--CG----GCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 125873 0.68 0.62325
Target:  5'- cGGCCAGCaUGCAggaGgcacGCCcGCGCGGg -3'
miRNA:   3'- cCCGGUCG-ACGUag-Ca---CGGcCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 223531 0.68 0.642454
Target:  5'- aGGaCUGGC-GCAUgGUGCCGcGCGUGGa -3'
miRNA:   3'- cCC-GGUCGaCGUAgCACGGC-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 120572 0.68 0.652048
Target:  5'- uGGCCcgGGCaagGCGUCuUGCCGGUgGCGGc -3'
miRNA:   3'- cCCGG--UCGa--CGUAGcACGGCCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 56356 0.68 0.670234
Target:  5'- -uGCCAGCUGaaaccgcCGUCGUcuccGCCGGCGUu- -3'
miRNA:   3'- ccCGGUCGAC-------GUAGCA----CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 63148 0.7 0.556542
Target:  5'- gGGGCguGCaccuguuuaccuUGCGUcCGUcucgcggcgcgGCCGGCGCGGc -3'
miRNA:   3'- -CCCGguCG------------ACGUA-GCA-----------CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 185288 0.7 0.556542
Target:  5'- cGGCC-GCUcaaaCGUCGgGCCGGCGUGGu -3'
miRNA:   3'- cCCGGuCGAc---GUAGCaCGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 167673 0.7 0.556542
Target:  5'- gGGGUCGGCcGCcguucGUCGUcacggGgCGGCGCGAg -3'
miRNA:   3'- -CCCGGUCGaCG-----UAGCA-----CgGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 167186 0.75 0.29721
Target:  5'- cGGGCgCAGCgGCcgCGgagGCCGGCGUa- -3'
miRNA:   3'- -CCCG-GUCGaCGuaGCa--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 55949 0.72 0.448147
Target:  5'- uGGCCAGCUgagacgcaGCAcCGUGCCGcugaCGCGAc -3'
miRNA:   3'- cCCGGUCGA--------CGUaGCACGGCc---GCGCU- -5'
29826 5' -61.6 NC_006273.1 + 197124 0.71 0.464578
Target:  5'- cGGGuCCGGCgGCGUCGgggaccgUGCCGcGCGCc- -3'
miRNA:   3'- -CCC-GGUCGaCGUAGC-------ACGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 1113 0.71 0.465452
Target:  5'- uGGCgGGCUGUugCGUGCCGGgGaCGGg -3'
miRNA:   3'- cCCGgUCGACGuaGCACGGCCgC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 34428 0.71 0.483098
Target:  5'- cGGCCAGagcgaUGCGUU-UGgCGGCGCGAc -3'
miRNA:   3'- cCCGGUCg----ACGUAGcACgGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 21845 0.7 0.51015
Target:  5'- cGGGUCuGCUGCccUCGUGCgaggaggaCGaGCGCGAa -3'
miRNA:   3'- -CCCGGuCGACGu-AGCACG--------GC-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 153366 0.7 0.537814
Target:  5'- aGGCCGGCgGCAcgcgCGUGCCcuGCGuCGAc -3'
miRNA:   3'- cCCGGUCGaCGUa---GCACGGc-CGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 33783 0.7 0.546217
Target:  5'- aGGGCCAGCacgGCGUUGgagGCCaGGUacauggcguagccGCGAc -3'
miRNA:   3'- -CCCGGUCGa--CGUAGCa--CGG-CCG-------------CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.