Results 81 - 96 of 96 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29826 | 5' | -61.6 | NC_006273.1 | + | 31659 | 0.79 | 0.163825 |
Target: 5'- aGGCCAGCUGCGUCGUcaaggaCGGCGUGu -3' miRNA: 3'- cCCGGUCGACGUAGCAcg----GCCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 87491 | 0.8 | 0.15248 |
Target: 5'- aGGCCAGC-GCAgCGUaGCUGGCGCGAu -3' miRNA: 3'- cCCGGUCGaCGUaGCA-CGGCCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 158227 | 0.71 | 0.483098 |
Target: 5'- aGGcGCgGGCgcGCGUCG-GCCGGCGaCGGc -3' miRNA: 3'- -CC-CGgUCGa-CGUAGCaCGGCCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 30682 | 0.7 | 0.51015 |
Target: 5'- cGGCCGGCcGCG--GUGCCGGCGg-- -3' miRNA: 3'- cCCGGUCGaCGUagCACGGCCGCgcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 170855 | 0.7 | 0.528532 |
Target: 5'- aGGCCGGCgGCAgggacaccgaugUCGaGCCGGCggGCGGg -3' miRNA: 3'- cCCGGUCGaCGU------------AGCaCGGCCG--CGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 81956 | 0.68 | 0.671188 |
Target: 5'- -uGCCGGC-GCccgcCGUGCCGGUGaCGAg -3' miRNA: 3'- ccCGGUCGaCGua--GCACGGCCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 36479 | 0.68 | 0.671188 |
Target: 5'- cGGGCUGGCgUGCuguuuucCGUGUugccgacggCGGCGCGGu -3' miRNA: 3'- -CCCGGUCG-ACGua-----GCACG---------GCCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 178960 | 0.68 | 0.665456 |
Target: 5'- cGGCUagAGCguggGCcgCGUGCCugggaacgugcgcacGGCGCGGu -3' miRNA: 3'- cCCGG--UCGa---CGuaGCACGG---------------CCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 206822 | 0.68 | 0.655883 |
Target: 5'- uGGCCGGCUGCAugcacauccacgcguUCGcGCaguGGCGUGc -3' miRNA: 3'- cCCGGUCGACGU---------------AGCaCGg--CCGCGCu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 167152 | 0.68 | 0.652048 |
Target: 5'- cGGGCC-GCUGgaaGUCG-GCgGGCGgGGg -3' miRNA: 3'- -CCCGGuCGACg--UAGCaCGgCCGCgCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 159913 | 0.68 | 0.642454 |
Target: 5'- cGGCgGGUccUGCGUUGcuacUGCCGGCGaCGGc -3' miRNA: 3'- cCCGgUCG--ACGUAGC----ACGGCCGC-GCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 2369 | 0.69 | 0.584964 |
Target: 5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3' miRNA: 3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 158312 | 0.7 | 0.556542 |
Target: 5'- uGGCCAGCUcGCGUUG-GC-GGCGCu- -3' miRNA: 3'- cCCGGUCGA-CGUAGCaCGgCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 94139 | 0.7 | 0.537814 |
Target: 5'- -aGCCuGCUGCGUgGUgaGCCGGUGCu- -3' miRNA: 3'- ccCGGuCGACGUAgCA--CGGCCGCGcu -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 189944 | 0.7 | 0.528532 |
Target: 5'- -aGCCGuCUGCAgcUCGUcgGCCGGCGUGGg -3' miRNA: 3'- ccCGGUcGACGU--AGCA--CGGCCGCGCU- -5' |
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29826 | 5' | -61.6 | NC_006273.1 | + | 130799 | 1.09 | 0.001356 |
Target: 5'- uGGGCCAGCUGCAUCGUGCCGGCGCGAc -3' miRNA: 3'- -CCCGGUCGACGUAGCACGGCCGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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