miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 36479 0.68 0.671188
Target:  5'- cGGGCUGGCgUGCuguuuucCGUGUugccgacggCGGCGCGGu -3'
miRNA:   3'- -CCCGGUCG-ACGua-----GCACG---------GCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 167152 0.68 0.652048
Target:  5'- cGGGCC-GCUGgaaGUCG-GCgGGCGgGGg -3'
miRNA:   3'- -CCCGGuCGACg--UAGCaCGgCCGCgCU- -5'
29826 5' -61.6 NC_006273.1 + 41051 0.71 0.465452
Target:  5'- uGGCgGGCUGUugCGUGCCGGgGaCGGg -3'
miRNA:   3'- cCCGgUCGACGuaGCACGGCCgC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 108692 0.75 0.290794
Target:  5'- cGGCU-GCUGCGUCGUGaCGGCGCc- -3'
miRNA:   3'- cCCGGuCGACGUAGCACgGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 190037 0.67 0.727702
Target:  5'- gGGGuCCAGU----UCG-GCCGGCGCGc -3'
miRNA:   3'- -CCC-GGUCGacguAGCaCGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 18651 0.67 0.708136
Target:  5'- cGGGCCuuuugugcccAGCgGCAUgGUGCUgcucgacaaguuuGGCGUGGu -3'
miRNA:   3'- -CCCGG----------UCGaCGUAgCACGG-------------CCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 2369 0.69 0.584964
Target:  5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3'
miRNA:   3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 31659 0.79 0.163825
Target:  5'- aGGCCAGCUGCGUCGUcaaggaCGGCGUGu -3'
miRNA:   3'- cCCGGUCGACGUAGCAcg----GCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 140510 0.67 0.69967
Target:  5'- cGGGaCCGaCUGcCGUCGaGCCGGgGCGu -3'
miRNA:   3'- -CCC-GGUcGAC-GUAGCaCGGCCgCGCu -5'
29826 5' -61.6 NC_006273.1 + 87491 0.8 0.15248
Target:  5'- aGGCCAGC-GCAgCGUaGCUGGCGCGAu -3'
miRNA:   3'- cCCGGUCGaCGUaGCA-CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 159913 0.68 0.642454
Target:  5'- cGGCgGGUccUGCGUUGcuacUGCCGGCGaCGGc -3'
miRNA:   3'- cCCGgUCG--ACGUAGC----ACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 81956 0.68 0.671188
Target:  5'- -uGCCGGC-GCccgcCGUGCCGGUGaCGAg -3'
miRNA:   3'- ccCGGUCGaCGua--GCACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 189944 0.7 0.528532
Target:  5'- -aGCCGuCUGCAgcUCGUcgGCCGGCGUGGg -3'
miRNA:   3'- ccCGGUcGACGU--AGCA--CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 158227 0.71 0.483098
Target:  5'- aGGcGCgGGCgcGCGUCG-GCCGGCGaCGGc -3'
miRNA:   3'- -CC-CGgUCGa-CGUAGCaCGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 31745 0.72 0.431205
Target:  5'- cGGGUCGGCUG-GUCGgGCCGuCGCGGa -3'
miRNA:   3'- -CCCGGUCGACgUAGCaCGGCcGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 230493 0.74 0.323968
Target:  5'- cGGCCGGCUG-GUCG-GUCGGCGCu- -3'
miRNA:   3'- cCCGGUCGACgUAGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 92295 0.66 0.746039
Target:  5'- aGGGCUcgcugaGGCUGUaAUCGcacaGCgCGGCGCGc -3'
miRNA:   3'- -CCCGG------UCGACG-UAGCa---CG-GCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 175334 0.67 0.727702
Target:  5'- gGGGCaAGUuucgcuuuUGCggCGUacaggaGCCGGCGCGGg -3'
miRNA:   3'- -CCCGgUCG--------ACGuaGCA------CGGCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 147552 0.67 0.709074
Target:  5'- aGGCUGGCgGCGUCG-GCgGGagcaGCGGg -3'
miRNA:   3'- cCCGGUCGaCGUAGCaCGgCCg---CGCU- -5'
29826 5' -61.6 NC_006273.1 + 8843 0.67 0.709074
Target:  5'- cGGaGCCGGCUcagaGCGgaccacgguugaUUGUGCCcggaccgugGGCGCGAc -3'
miRNA:   3'- -CC-CGGUCGA----CGU------------AGCACGG---------CCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.