miRNA display CGI


Results 41 - 60 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29826 5' -61.6 NC_006273.1 + 40571 0.66 0.781599
Target:  5'- cGGcGCUuuCUGCG-CGcUGCCGGUGCGu -3'
miRNA:   3'- -CC-CGGucGACGUaGC-ACGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 158312 0.7 0.556542
Target:  5'- uGGCCAGCUcGCGUUG-GC-GGCGCu- -3'
miRNA:   3'- cCCGGUCGA-CGUAGCaCGgCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 36479 0.68 0.671188
Target:  5'- cGGGCUGGCgUGCuguuuucCGUGUugccgacggCGGCGCGGu -3'
miRNA:   3'- -CCCGGUCG-ACGua-----GCACG---------GCCGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 140510 0.67 0.69967
Target:  5'- cGGGaCCGaCUGcCGUCGaGCCGGgGCGu -3'
miRNA:   3'- -CCC-GGUcGAC-GUAGCaCGGCCgCGCu -5'
29826 5' -61.6 NC_006273.1 + 118619 0.67 0.709074
Target:  5'- -cGCCGGCUGgAgagCGagagGCCGGCGUa- -3'
miRNA:   3'- ccCGGUCGACgUa--GCa---CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 93623 0.66 0.790212
Target:  5'- cGGCCugcgcAGCUucgcGCAUCcacuggcGCCGGCGCGc -3'
miRNA:   3'- cCCGG-----UCGA----CGUAGca-----CGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 177257 0.66 0.781599
Target:  5'- aGGCC-GCUGCG-CGUGCCcGUgGUGAa -3'
miRNA:   3'- cCCGGuCGACGUaGCACGGcCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 173504 0.66 0.764025
Target:  5'- cGGuCCAGCUGU-UCGUGCaacugcucggCGGCGUa- -3'
miRNA:   3'- cCC-GGUCGACGuAGCACG----------GCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 171158 0.66 0.743309
Target:  5'- cGGGCCAGgU-CAUCGgcgcuagcgcgcgaUGUCGGUGCa- -3'
miRNA:   3'- -CCCGGUCgAcGUAGC--------------ACGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 190037 0.67 0.727702
Target:  5'- gGGGuCCAGU----UCG-GCCGGCGCGc -3'
miRNA:   3'- -CCC-GGUCGacguAGCaCGGCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 132759 0.67 0.709074
Target:  5'- aGGGaCgAGCUGUAcgaCGUGCCGG-GCa- -3'
miRNA:   3'- -CCC-GgUCGACGUa--GCACGGCCgCGcu -5'
29826 5' -61.6 NC_006273.1 + 152623 0.67 0.709074
Target:  5'- uGGCCcGCUGCA-CG-GCCGcGCGUa- -3'
miRNA:   3'- cCCGGuCGACGUaGCaCGGC-CGCGcu -5'
29826 5' -61.6 NC_006273.1 + 115708 0.67 0.727702
Target:  5'- gGGGUaauGC-GCAUCuUGCCGGUGcCGAu -3'
miRNA:   3'- -CCCGgu-CGaCGUAGcACGGCCGC-GCU- -5'
29826 5' -61.6 NC_006273.1 + 141712 0.67 0.698727
Target:  5'- aGGGCgGGauccgccgccaUUGCGUCGUcccagcagggcgcGCCGGCGCc- -3'
miRNA:   3'- -CCCGgUC-----------GACGUAGCA-------------CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 147955 0.67 0.690216
Target:  5'- cGGCCuagAGCaGCGUagcgcCGUGuuGGCGCGc -3'
miRNA:   3'- cCCGG---UCGaCGUA-----GCACggCCGCGCu -5'
29826 5' -61.6 NC_006273.1 + 21845 0.7 0.51015
Target:  5'- cGGGUCuGCUGCccUCGUGCgaggaggaCGaGCGCGAa -3'
miRNA:   3'- -CCCGGuCGACGu-AGCACG--------GC-CGCGCU- -5'
29826 5' -61.6 NC_006273.1 + 42221 0.67 0.727702
Target:  5'- cGGG-CAGCguggGCuUCGgcgGCCGGUGCc- -3'
miRNA:   3'- -CCCgGUCGa---CGuAGCa--CGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 197262 0.69 0.584964
Target:  5'- cGGGCguGCUGgG-CGcGCUGGCGCu- -3'
miRNA:   3'- -CCCGguCGACgUaGCaCGGCCGCGcu -5'
29826 5' -61.6 NC_006273.1 + 161672 0.69 0.594505
Target:  5'- gGGGUCGGC-GC-UC-UGCCGGCuGCGGc -3'
miRNA:   3'- -CCCGGUCGaCGuAGcACGGCCG-CGCU- -5'
29826 5' -61.6 NC_006273.1 + 21516 0.69 0.60407
Target:  5'- -cGCCAGCUGUuacAUCGccgGCgGGCGCu- -3'
miRNA:   3'- ccCGGUCGACG---UAGCa--CGgCCGCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.