miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29828 3' -55.2 NC_006273.1 + 125077 0.66 0.9742
Target:  5'- aCGGUagaaauggccUUCGCCUACGCAUU--AGCACu -3'
miRNA:   3'- aGCCA----------AAGUGGGUGUGUGGgcUCGUG- -5'
29828 3' -55.2 NC_006273.1 + 209946 0.66 0.9742
Target:  5'- cCGGUUUCAUCauaaAC-CGCCgugagaagCGGGCGCg -3'
miRNA:   3'- aGCCAAAGUGGg---UGuGUGG--------GCUCGUG- -5'
29828 3' -55.2 NC_006273.1 + 174846 0.66 0.9742
Target:  5'- cUCGGU---GCCCGCACAUCgGuGC-Cg -3'
miRNA:   3'- -AGCCAaagUGGGUGUGUGGgCuCGuG- -5'
29828 3' -55.2 NC_006273.1 + 79046 0.66 0.9742
Target:  5'- -aGGcUggGCCCACGCGCCaccaGAGCcuGCg -3'
miRNA:   3'- agCCaAagUGGGUGUGUGGg---CUCG--UG- -5'
29828 3' -55.2 NC_006273.1 + 184534 0.66 0.973942
Target:  5'- cUGGUUUCcCCUGCGCAUCCugaacgaGAGcCGCg -3'
miRNA:   3'- aGCCAAAGuGGGUGUGUGGG-------CUC-GUG- -5'
29828 3' -55.2 NC_006273.1 + 188428 0.66 0.971539
Target:  5'- cCGGcgUCACUCAgccacCACACCCGuAGUcgACa -3'
miRNA:   3'- aGCCaaAGUGGGU-----GUGUGGGC-UCG--UG- -5'
29828 3' -55.2 NC_006273.1 + 5184 0.66 0.971539
Target:  5'- aCGGgucaugCACCCACACGCgUuuGGCAUg -3'
miRNA:   3'- aGCCaaa---GUGGGUGUGUGgGc-UCGUG- -5'
29828 3' -55.2 NC_006273.1 + 85475 0.66 0.971539
Target:  5'- cUCGG-----CCCACACGCCguggaaGGGCGCg -3'
miRNA:   3'- -AGCCaaaguGGGUGUGUGGg-----CUCGUG- -5'
29828 3' -55.2 NC_006273.1 + 160008 0.66 0.971539
Target:  5'- gUGGUUUCuuCCGCACAgCaguuGAGCAg -3'
miRNA:   3'- aGCCAAAGugGGUGUGUgGg---CUCGUg -5'
29828 3' -55.2 NC_006273.1 + 18936 0.66 0.968687
Target:  5'- cUGGUUUCugCgACcUACUCGcGGCACg -3'
miRNA:   3'- aGCCAAAGugGgUGuGUGGGC-UCGUG- -5'
29828 3' -55.2 NC_006273.1 + 65390 0.66 0.968687
Target:  5'- cUCGuccUCACCCAaaaaaACACCCGAGaaaCGCc -3'
miRNA:   3'- -AGCcaaAGUGGGUg----UGUGGGCUC---GUG- -5'
29828 3' -55.2 NC_006273.1 + 199390 0.66 0.968687
Target:  5'- gCGGUcugcgugaugccUggACCCACaaGCGCCCGAagccGCGCg -3'
miRNA:   3'- aGCCA------------AagUGGGUG--UGUGGGCU----CGUG- -5'
29828 3' -55.2 NC_006273.1 + 174141 0.66 0.968687
Target:  5'- gCGGUgcaaGCCCAUuC-CCCGAGCuCa -3'
miRNA:   3'- aGCCAaag-UGGGUGuGuGGGCUCGuG- -5'
29828 3' -55.2 NC_006273.1 + 202242 0.66 0.968687
Target:  5'- gUCGGaggUCACgCCACAUgaaGCCgCGgcGGCGCg -3'
miRNA:   3'- -AGCCaa-AGUG-GGUGUG---UGG-GC--UCGUG- -5'
29828 3' -55.2 NC_006273.1 + 200176 0.66 0.967793
Target:  5'- cUGGUUUCguuGCCCACGgcguuuuugcuucuCGCCguuggacuCGAGCGCa -3'
miRNA:   3'- aGCCAAAG---UGGGUGU--------------GUGG--------GCUCGUG- -5'
29828 3' -55.2 NC_006273.1 + 140081 0.66 0.965637
Target:  5'- -aGGUgUCauggcgGCCCACcgucgAC-CCCGAGCGCu -3'
miRNA:   3'- agCCAaAG------UGGGUG-----UGuGGGCUCGUG- -5'
29828 3' -55.2 NC_006273.1 + 46395 0.66 0.965637
Target:  5'- ------aUACCCGCGCcgcguaagaACCUGAGCACg -3'
miRNA:   3'- agccaaaGUGGGUGUG---------UGGGCUCGUG- -5'
29828 3' -55.2 NC_006273.1 + 64414 0.66 0.96436
Target:  5'- -gGGUgcgcgcuacgaACCCGCACACCUGGcCGCg -3'
miRNA:   3'- agCCAaag--------UGGGUGUGUGGGCUcGUG- -5'
29828 3' -55.2 NC_006273.1 + 94520 0.66 0.962383
Target:  5'- gCGGg--CACCuCGCGC-CCCGAgaagcggccGCGCa -3'
miRNA:   3'- aGCCaaaGUGG-GUGUGuGGGCU---------CGUG- -5'
29828 3' -55.2 NC_006273.1 + 1884 0.66 0.962383
Target:  5'- -aGGcUUUCGCgCACACGauUCCGAGgACg -3'
miRNA:   3'- agCC-AAAGUGgGUGUGU--GGGCUCgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.