miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29834 3' -57.9 NC_006273.1 + 147514 0.66 0.935238
Target:  5'- gCGgcGGcCCgcucgcucgggAGGCGaUGGgggCGCGCCGAu -3'
miRNA:   3'- -GCauCCuGG-----------UCUGC-ACCa--GCGCGGCU- -5'
29834 3' -57.9 NC_006273.1 + 144810 0.66 0.930456
Target:  5'- ---cGGuGCCGGGCGUGGaguuUCGCGgUGAa -3'
miRNA:   3'- gcauCC-UGGUCUGCACC----AGCGCgGCU- -5'
29834 3' -57.9 NC_006273.1 + 168081 0.66 0.925459
Target:  5'- -aUAGGACCAGuccCGccGG-CGCGCCa- -3'
miRNA:   3'- gcAUCCUGGUCu--GCa-CCaGCGCGGcu -5'
29834 3' -57.9 NC_006273.1 + 190049 0.66 0.922358
Target:  5'- gGUGGGACUccuccgacggcggggGGACGaacaccGUCgGCGCCGAa -3'
miRNA:   3'- gCAUCCUGG---------------UCUGCac----CAG-CGCGGCU- -5'
29834 3' -57.9 NC_006273.1 + 1971 0.66 0.914821
Target:  5'- --cGGGGCCggcgacggGGACGacGUCGCGCCa- -3'
miRNA:   3'- gcaUCCUGG--------UCUGCacCAGCGCGGcu -5'
29834 3' -57.9 NC_006273.1 + 116516 0.66 0.914821
Target:  5'- gCGcAGGGCCAGGgacagccuucguUGUcGGUCGCGCUc- -3'
miRNA:   3'- -GCaUCCUGGUCU------------GCA-CCAGCGCGGcu -5'
29834 3' -57.9 NC_006273.1 + 100836 0.66 0.914821
Target:  5'- gGUAGGguGCCAGACGUagacucucGGccguguaGCGCUGAa -3'
miRNA:   3'- gCAUCC--UGGUCUGCA--------CCag-----CGCGGCU- -5'
29834 3' -57.9 NC_006273.1 + 83328 0.66 0.914821
Target:  5'- cCGgguGGACCcGGCGUGGUgggacccggCGgCGCCGu -3'
miRNA:   3'- -GCau-CCUGGuCUGCACCA---------GC-GCGGCu -5'
29834 3' -57.9 NC_006273.1 + 36603 0.67 0.909181
Target:  5'- ---cGGGCCAGAUGagGGUCaguuGCGCCu- -3'
miRNA:   3'- gcauCCUGGUCUGCa-CCAG----CGCGGcu -5'
29834 3' -57.9 NC_006273.1 + 89958 0.67 0.909181
Target:  5'- --cAGGAgCgGGAUGUGGUCGCaGUgGAa -3'
miRNA:   3'- gcaUCCU-GgUCUGCACCAGCG-CGgCU- -5'
29834 3' -57.9 NC_006273.1 + 125482 0.67 0.909181
Target:  5'- --cAGcGCCAG-CGUGGUgGUGCUGAg -3'
miRNA:   3'- gcaUCcUGGUCuGCACCAgCGCGGCU- -5'
29834 3' -57.9 NC_006273.1 + 202545 0.67 0.897268
Target:  5'- -uUGGGACCGcagcguggccGGCGUGG-CG-GCCGAc -3'
miRNA:   3'- gcAUCCUGGU----------CUGCACCaGCgCGGCU- -5'
29834 3' -57.9 NC_006273.1 + 103177 0.67 0.897268
Target:  5'- uGUcGGGuACguGACGgagcaGGUCGCGCgGAa -3'
miRNA:   3'- gCA-UCC-UGguCUGCa----CCAGCGCGgCU- -5'
29834 3' -57.9 NC_006273.1 + 103479 0.68 0.87098
Target:  5'- uGgcGcGCCAGcuGCGUGGagGUGCCGAa -3'
miRNA:   3'- gCauCcUGGUC--UGCACCagCGCGGCU- -5'
29834 3' -57.9 NC_006273.1 + 62128 0.68 0.87098
Target:  5'- --gGGGGCCAGcagcCGcUGGUC-CGCCGGg -3'
miRNA:   3'- gcaUCCUGGUCu---GC-ACCAGcGCGGCU- -5'
29834 3' -57.9 NC_006273.1 + 74174 0.68 0.87098
Target:  5'- aGUccAGGA-UAGACGUGGUCGCcuGCgGGg -3'
miRNA:   3'- gCA--UCCUgGUCUGCACCAGCG--CGgCU- -5'
29834 3' -57.9 NC_006273.1 + 88831 0.68 0.870282
Target:  5'- ---uGGGCCAuguuuacGACGU-GUCGCGCCGu -3'
miRNA:   3'- gcauCCUGGU-------CUGCAcCAGCGCGGCu -5'
29834 3' -57.9 NC_006273.1 + 105272 0.68 0.863916
Target:  5'- uCGUccAGGugCAGGCugaGGUCGCGCgGc -3'
miRNA:   3'- -GCA--UCCugGUCUGca-CCAGCGCGgCu -5'
29834 3' -57.9 NC_006273.1 + 97617 0.68 0.856665
Target:  5'- cCGgAGGugCgguaAGACGggcaaauacGGUCGUGCCGAg -3'
miRNA:   3'- -GCaUCCugG----UCUGCa--------CCAGCGCGGCU- -5'
29834 3' -57.9 NC_006273.1 + 8236 0.68 0.849231
Target:  5'- gGUGGGGCCgGGACGgggugGGaCGagaGCCGGu -3'
miRNA:   3'- gCAUCCUGG-UCUGCa----CCaGCg--CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.