miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29834 5' -51.8 NC_006273.1 + 145498 0.66 0.996677
Target:  5'- uGCCGuCUCUACCGUGUUAGaCCGu-- -3'
miRNA:   3'- cCGGUuGAGAUGGUGCAAUC-GGUcau -5'
29834 5' -51.8 NC_006273.1 + 227380 0.66 0.996677
Target:  5'- aGGCCGAUcgaCUGCCGCaugagAGCgGGUGg -3'
miRNA:   3'- -CCGGUUGa--GAUGGUGcaa--UCGgUCAU- -5'
29834 5' -51.8 NC_006273.1 + 131289 0.66 0.996344
Target:  5'- gGGCCAgguGCUacugaccauggccuaCUACCuauuCGagGGCCAGUAc -3'
miRNA:   3'- -CCGGU---UGA---------------GAUGGu---GCaaUCGGUCAU- -5'
29834 5' -51.8 NC_006273.1 + 80973 0.66 0.996108
Target:  5'- cGGCCAGCUCgcagagcuCCugGUacGCgCGGUu -3'
miRNA:   3'- -CCGGUUGAGau------GGugCAauCG-GUCAu -5'
29834 5' -51.8 NC_006273.1 + 120147 0.66 0.995461
Target:  5'- gGGCCGGCUCaccuCUAUGUUGGUacgCAGg- -3'
miRNA:   3'- -CCGGUUGAGau--GGUGCAAUCG---GUCau -5'
29834 5' -51.8 NC_006273.1 + 213394 0.66 0.995391
Target:  5'- cGGCCAGCagcccgaUCUucggAUC-CGUcAGCCAGUAa -3'
miRNA:   3'- -CCGGUUG-------AGA----UGGuGCAaUCGGUCAU- -5'
29834 5' -51.8 NC_006273.1 + 218397 0.66 0.994728
Target:  5'- aGCCAGCgaaaCUGCCGCGcgUAGUCGc-- -3'
miRNA:   3'- cCGGUUGa---GAUGGUGCa-AUCGGUcau -5'
29834 5' -51.8 NC_006273.1 + 218808 0.66 0.994728
Target:  5'- cGGCUGGCgCUACCuCGaagGGCCAGc- -3'
miRNA:   3'- -CCGGUUGaGAUGGuGCaa-UCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 169684 0.66 0.993904
Target:  5'- uGGCCG---UUGCCGCGUUAGCgccgcuuuCGGUAc -3'
miRNA:   3'- -CCGGUugaGAUGGUGCAAUCG--------GUCAU- -5'
29834 5' -51.8 NC_006273.1 + 113480 0.66 0.993904
Target:  5'- uGGCCGAC-CUGCUggGUucggaugccgUAGCCGGc- -3'
miRNA:   3'- -CCGGUUGaGAUGGugCA----------AUCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 221446 0.66 0.992978
Target:  5'- gGGCCAAUcggACCGCGggAGCUcuccaAGUGg -3'
miRNA:   3'- -CCGGUUGagaUGGUGCaaUCGG-----UCAU- -5'
29834 5' -51.8 NC_006273.1 + 48831 0.66 0.992978
Target:  5'- gGGCCugaAGCUCcugcgGCCACaGgugcgUAGCCAGg- -3'
miRNA:   3'- -CCGG---UUGAGa----UGGUG-Ca----AUCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 110319 0.66 0.992978
Target:  5'- aGGCCAuUUCUACCguGCGgcGGuCCAGc- -3'
miRNA:   3'- -CCGGUuGAGAUGG--UGCaaUC-GGUCau -5'
29834 5' -51.8 NC_006273.1 + 33784 0.67 0.991944
Target:  5'- gGGCCAGC---ACgGCGUUggaGGCCAGg- -3'
miRNA:   3'- -CCGGUUGagaUGgUGCAA---UCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 49956 0.67 0.991944
Target:  5'- gGGCCAG----GCCACGUgcAGCCGGg- -3'
miRNA:   3'- -CCGGUUgagaUGGUGCAa-UCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 30107 0.67 0.990792
Target:  5'- aGGCCgAACUCggccgugagcGCCAgGcUAGCCAGa- -3'
miRNA:   3'- -CCGG-UUGAGa---------UGGUgCaAUCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 68070 0.67 0.990792
Target:  5'- uGGCCGcCgCUGCCGCcgcugUGGCCGGa- -3'
miRNA:   3'- -CCGGUuGaGAUGGUGca---AUCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 212892 0.67 0.989515
Target:  5'- gGGCgaAACUCggcgaaACCGCGUagcaUAGCCAGc- -3'
miRNA:   3'- -CCGg-UUGAGa-----UGGUGCA----AUCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 94133 0.67 0.989515
Target:  5'- cGUCAaaGC-CUGCUGCGUggugAGCCGGUGc -3'
miRNA:   3'- cCGGU--UGaGAUGGUGCAa---UCGGUCAU- -5'
29834 5' -51.8 NC_006273.1 + 112572 0.67 0.988103
Target:  5'- cGGCCGccgguGCuucuUCUACCugGcUGGCgCAGUGc -3'
miRNA:   3'- -CCGGU-----UG----AGAUGGugCaAUCG-GUCAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.