miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29834 5' -51.8 NC_006273.1 + 120637 1.09 0.009631
Target:  5'- aGGCCAACUCUACCACGUUAGCCAGUAc -3'
miRNA:   3'- -CCGGUUGAGAUGGUGCAAUCGGUCAU- -5'
29834 5' -51.8 NC_006273.1 + 95065 0.75 0.753401
Target:  5'- cGCCGGCUCUcgguccGCCuuauccuggGCGUUGGCCGGUc -3'
miRNA:   3'- cCGGUUGAGA------UGG---------UGCAAUCGGUCAu -5'
29834 5' -51.8 NC_006273.1 + 124559 0.71 0.914225
Target:  5'- uGGUCAGCUCcgagGCUAgGUUAGCCAc-- -3'
miRNA:   3'- -CCGGUUGAGa---UGGUgCAAUCGGUcau -5'
29834 5' -51.8 NC_006273.1 + 6449 0.7 0.949713
Target:  5'- gGGCCugccACUggaCcGCCACGUauucUAGCCAGUGu -3'
miRNA:   3'- -CCGGu---UGA---GaUGGUGCA----AUCGGUCAU- -5'
29834 5' -51.8 NC_006273.1 + 68265 0.7 0.957696
Target:  5'- cGGCCGACUgUcgguacgcGCCACucuuuGCCAGUAa -3'
miRNA:   3'- -CCGGUUGAgA--------UGGUGcaau-CGGUCAU- -5'
29834 5' -51.8 NC_006273.1 + 196800 0.69 0.970963
Target:  5'- aGCCGcaggcGCUCUGCCA-GUUGGCgAGg- -3'
miRNA:   3'- cCGGU-----UGAGAUGGUgCAAUCGgUCau -5'
29834 5' -51.8 NC_006273.1 + 167187 0.69 0.97375
Target:  5'- gGGCgCAGCg--GCCGCGgaGGCCGGc- -3'
miRNA:   3'- -CCG-GUUGagaUGGUGCaaUCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 220279 0.69 0.97375
Target:  5'- cGCCuAGCacaUACCACGgcgUGGCCAGa- -3'
miRNA:   3'- cCGG-UUGag-AUGGUGCa--AUCGGUCau -5'
29834 5' -51.8 NC_006273.1 + 141152 0.68 0.976337
Target:  5'- cGGCCGgaACcCUGCCGCGgacugcGCCGGg- -3'
miRNA:   3'- -CCGGU--UGaGAUGGUGCaau---CGGUCau -5'
29834 5' -51.8 NC_006273.1 + 175975 0.68 0.978732
Target:  5'- cGGCCGACcCUuucUCGCGUgacGCCAGUu -3'
miRNA:   3'- -CCGGUUGaGAu--GGUGCAau-CGGUCAu -5'
29834 5' -51.8 NC_006273.1 + 25469 0.68 0.980942
Target:  5'- uGGCCGGCUUgACCGCGUUGuugagcGCCu--- -3'
miRNA:   3'- -CCGGUUGAGaUGGUGCAAU------CGGucau -5'
29834 5' -51.8 NC_006273.1 + 185890 0.68 0.982583
Target:  5'- cGCCGuuauGCUCUACCGCGgcgacguggagAGCCuGUc -3'
miRNA:   3'- cCGGU----UGAGAUGGUGCaa---------UCGGuCAu -5'
29834 5' -51.8 NC_006273.1 + 49478 0.68 0.984843
Target:  5'- cGGCCGacagGCUCU-CCACGUc-GCCgcGGUAg -3'
miRNA:   3'- -CCGGU----UGAGAuGGUGCAauCGG--UCAU- -5'
29834 5' -51.8 NC_006273.1 + 38685 0.67 0.986548
Target:  5'- cGCCAGCUcCUGCCACGcgc-CCAGc- -3'
miRNA:   3'- cCGGUUGA-GAUGGUGCaaucGGUCau -5'
29834 5' -51.8 NC_006273.1 + 233577 0.67 0.986548
Target:  5'- cGCCAGCUcCUGCCACGcgc-CCAGc- -3'
miRNA:   3'- cCGGUUGA-GAUGGUGCaaucGGUCau -5'
29834 5' -51.8 NC_006273.1 + 119697 0.67 0.986548
Target:  5'- aGGCCAGCugcuccagggcgUCUACCAgCGUcAGCgGGa- -3'
miRNA:   3'- -CCGGUUG------------AGAUGGU-GCAaUCGgUCau -5'
29834 5' -51.8 NC_006273.1 + 196473 0.67 0.988103
Target:  5'- cGCCGcCUUgggcgucACCACGUUGGaCCAGUc -3'
miRNA:   3'- cCGGUuGAGa------UGGUGCAAUC-GGUCAu -5'
29834 5' -51.8 NC_006273.1 + 112572 0.67 0.988103
Target:  5'- cGGCCGccgguGCuucuUCUACCugGcUGGCgCAGUGc -3'
miRNA:   3'- -CCGGU-----UG----AGAUGGugCaAUCG-GUCAU- -5'
29834 5' -51.8 NC_006273.1 + 79841 0.67 0.988103
Target:  5'- cGCCGACgcugCUACUACuGUUAcuGCCGGa- -3'
miRNA:   3'- cCGGUUGa---GAUGGUG-CAAU--CGGUCau -5'
29834 5' -51.8 NC_006273.1 + 212892 0.67 0.989515
Target:  5'- gGGCgaAACUCggcgaaACCGCGUagcaUAGCCAGc- -3'
miRNA:   3'- -CCGg-UUGAGa-----UGGUGCA----AUCGGUCau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.