miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29847 3' -58.3 NC_006273.1 + 131954 0.66 0.931296
Target:  5'- uUCCGAGUcugucUUCUCgCCGCuGgaacgcUCCCuguCCGGc -3'
miRNA:   3'- -AGGCUCA-----AAGAG-GGCGuC------AGGG---GGCC- -5'
29847 3' -58.3 NC_006273.1 + 152054 0.66 0.931296
Target:  5'- gCCGGGUcccaCCaCGCcgGGUCCaCCCGGa -3'
miRNA:   3'- aGGCUCAaagaGG-GCG--UCAGG-GGGCC- -5'
29847 3' -58.3 NC_006273.1 + 200059 0.66 0.929837
Target:  5'- cUCCGAGUccauaUCCCGCggccuggguguuagAGUCCguaCCUGGc -3'
miRNA:   3'- -AGGCUCAaag--AGGGCG--------------UCAGG---GGGCC- -5'
29847 3' -58.3 NC_006273.1 + 46143 0.66 0.92636
Target:  5'- cCCGAGUUUcCUCCgGCgcgauucgAGaUCCCCGa -3'
miRNA:   3'- aGGCUCAAA-GAGGgCG--------UCaGGGGGCc -5'
29847 3' -58.3 NC_006273.1 + 137630 0.66 0.92636
Target:  5'- cUCCGGGacgUCUUgCCGUcGUCCgucaCCCGGg -3'
miRNA:   3'- -AGGCUCaa-AGAG-GGCGuCAGG----GGGCC- -5'
29847 3' -58.3 NC_006273.1 + 191319 0.66 0.92636
Target:  5'- cUCCGcgagcaaauGUUaaCUCCCGCGGUCuUUCCGGc -3'
miRNA:   3'- -AGGCu--------CAAa-GAGGGCGUCAG-GGGGCC- -5'
29847 3' -58.3 NC_006273.1 + 149648 0.66 0.921212
Target:  5'- aUCGGGUUUCUCCCuccacGCcG-CCCgCGGc -3'
miRNA:   3'- aGGCUCAAAGAGGG-----CGuCaGGGgGCC- -5'
29847 3' -58.3 NC_006273.1 + 226126 0.66 0.919626
Target:  5'- gCCGAGUUUCgccagcgacucuuuUCCCGCGauGUaUCCUGGu -3'
miRNA:   3'- aGGCUCAAAG--------------AGGGCGU--CAgGGGGCC- -5'
29847 3' -58.3 NC_006273.1 + 198506 0.66 0.915303
Target:  5'- -aCGAGgagcUUCUCCCcgacuccGCGGUCCgcgaCCGGc -3'
miRNA:   3'- agGCUCa---AAGAGGG-------CGUCAGGg---GGCC- -5'
29847 3' -58.3 NC_006273.1 + 167353 0.66 0.904496
Target:  5'- gCCGAGcccacacCUgCCgGCAGUCCUCCGc -3'
miRNA:   3'- aGGCUCaaa----GA-GGgCGUCAGGGGGCc -5'
29847 3' -58.3 NC_006273.1 + 161601 0.67 0.885908
Target:  5'- aUCCGAGUUgcUCUCCCaCcauGGUCgCCgCUGGc -3'
miRNA:   3'- -AGGCUCAA--AGAGGGcG---UCAG-GG-GGCC- -5'
29847 3' -58.3 NC_006273.1 + 94210 0.67 0.872512
Target:  5'- cCCGGcGUg---CCCGCcGcCCCCCGGc -3'
miRNA:   3'- aGGCU-CAaagaGGGCGuCaGGGGGCC- -5'
29847 3' -58.3 NC_006273.1 + 141457 0.68 0.85835
Target:  5'- cCCGcGggUCcuggCCCGCgcaugcgcaccgGGUCCCCUGGu -3'
miRNA:   3'- aGGCuCaaAGa---GGGCG------------UCAGGGGGCC- -5'
29847 3' -58.3 NC_006273.1 + 62124 0.68 0.843461
Target:  5'- uUCCGGGggccagCagCCGCuGGUCCgCCGGg -3'
miRNA:   3'- -AGGCUCaaa---GagGGCG-UCAGGgGGCC- -5'
29847 3' -58.3 NC_006273.1 + 213264 0.68 0.827889
Target:  5'- aCCGcagaGGcUUCUCCCGCGGcaguuUCCUCCGc -3'
miRNA:   3'- aGGC----UCaAAGAGGGCGUC-----AGGGGGCc -5'
29847 3' -58.3 NC_006273.1 + 195958 0.68 0.819861
Target:  5'- aCCGGGUagaacCCCGCGGgCCgCCGGg -3'
miRNA:   3'- aGGCUCAaaga-GGGCGUCaGGgGGCC- -5'
29847 3' -58.3 NC_006273.1 + 1065 0.68 0.819861
Target:  5'- aCCGGGUagaacCCCGCGGgCCgCCGGg -3'
miRNA:   3'- aGGCUCAaaga-GGGCGUCaGGgGGCC- -5'
29847 3' -58.3 NC_006273.1 + 79029 0.69 0.768756
Target:  5'- cCCGGGUUUUUCUCuuGGUCgaaCCCGGc -3'
miRNA:   3'- aGGCUCAAAGAGGGcgUCAGg--GGGCC- -5'
29847 3' -58.3 NC_006273.1 + 52718 0.7 0.732422
Target:  5'- cUCCGuGUc-CUCCCGCucuguGUCCUCCGu -3'
miRNA:   3'- -AGGCuCAaaGAGGGCGu----CAGGGGGCc -5'
29847 3' -58.3 NC_006273.1 + 67622 0.71 0.713759
Target:  5'- gCgGGGUUUUUUgCGUAuUCCCCCGGa -3'
miRNA:   3'- aGgCUCAAAGAGgGCGUcAGGGGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.