miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29847 5' -52.6 NC_006273.1 + 101211 0.66 0.995476
Target:  5'- gCACCGAGGcGGAcGcGGccacgcgucgcuugaAAGAGGAGGa -3'
miRNA:   3'- -GUGGCUCCuUCUcCuCC---------------UUCUUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 38497 0.66 0.995201
Target:  5'- --aUGAGaGAAGAgaaaacagGGAGGAcgaAGGAGGGGa -3'
miRNA:   3'- gugGCUC-CUUCU--------CCUCCU---UCUUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 43073 0.66 0.995201
Target:  5'- gCACCGAGGAA-AGGucGggGuuGuGGa -3'
miRNA:   3'- -GUGGCUCCUUcUCCucCuuCuuCuCC- -5'
29847 5' -52.6 NC_006273.1 + 166276 0.66 0.995201
Target:  5'- gUAUgGAuacaGAAGAGGAGGggGAAGuAGc -3'
miRNA:   3'- -GUGgCUc---CUUCUCCUCCuuCUUC-UCc -5'
29847 5' -52.6 NC_006273.1 + 95669 0.66 0.995201
Target:  5'- aCGCCGAGGAAGAcgacaccacuagGGAcGAcGAAGAc- -3'
miRNA:   3'- -GUGGCUCCUUCU------------CCUcCUuCUUCUcc -5'
29847 5' -52.6 NC_006273.1 + 104151 0.66 0.994453
Target:  5'- --aCGAGGgcGAGGuGG-GGcAGAGGa -3'
miRNA:   3'- gugGCUCCuuCUCCuCCuUCuUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 159245 0.66 0.994374
Target:  5'- aGCCGuccgucuGGGAcGaAGGAgaagaugaugGGGAGAGGAGGa -3'
miRNA:   3'- gUGGC-------UCCUuC-UCCU----------CCUUCUUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 20878 0.66 0.993615
Target:  5'- aACUGAauaGGAGGucacAGGAGGA-GAAcGAGGa -3'
miRNA:   3'- gUGGCU---CCUUC----UCCUCCUuCUU-CUCC- -5'
29847 5' -52.6 NC_006273.1 + 47464 0.66 0.992677
Target:  5'- -uUCGGGGAcGAGGAcGAAGAGcAGGa -3'
miRNA:   3'- guGGCUCCUuCUCCUcCUUCUUcUCC- -5'
29847 5' -52.6 NC_006273.1 + 149229 0.66 0.992677
Target:  5'- uGCuCGGGGAAaAGGcguuGGAcGggGAGGa -3'
miRNA:   3'- gUG-GCUCCUUcUCCu---CCUuCuuCUCC- -5'
29847 5' -52.6 NC_006273.1 + 117221 0.67 0.991634
Target:  5'- aGuuGGGGAGGAaGAGGccGcAGAGGg -3'
miRNA:   3'- gUggCUCCUUCUcCUCCuuCuUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 181999 0.67 0.991634
Target:  5'- gUACCaGGGAGGAGGGGuuAAGAAGucacAGGu -3'
miRNA:   3'- -GUGGcUCCUUCUCCUCc-UUCUUC----UCC- -5'
29847 5' -52.6 NC_006273.1 + 178821 0.67 0.990476
Target:  5'- gAUCGGGcGgcGGcGGcGGAGGAGGAGGc -3'
miRNA:   3'- gUGGCUC-CuuCU-CCuCCUUCUUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 31397 0.67 0.990476
Target:  5'- gCACCGcgccaccGGAAGGacuucacGGGAAGAAGAGGc -3'
miRNA:   3'- -GUGGCu------CCUUCUcc-----UCCUUCUUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 170927 0.67 0.990476
Target:  5'- --aUGAGGAAG-GGAGu--GGAGAGGg -3'
miRNA:   3'- gugGCUCCUUCuCCUCcuuCUUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 89392 0.67 0.990476
Target:  5'- cCACCu-GGAcGGGGGGGAccGGggGcGGGg -3'
miRNA:   3'- -GUGGcuCCUuCUCCUCCU--UCuuC-UCC- -5'
29847 5' -52.6 NC_006273.1 + 120346 0.67 0.987785
Target:  5'- aUugCGAaggcGGGAuGGGGGGAGGGucAGGGGa -3'
miRNA:   3'- -GugGCU----CCUUcUCCUCCUUCU--UCUCC- -5'
29847 5' -52.6 NC_006273.1 + 221932 0.67 0.986236
Target:  5'- aCGCCcuccaGGGAuccuGGGGAGGAGGGAguccuaguGAGGc -3'
miRNA:   3'- -GUGGc----UCCUu---CUCCUCCUUCUU--------CUCC- -5'
29847 5' -52.6 NC_006273.1 + 40631 0.67 0.986236
Target:  5'- uCACCGGagacGGggGGGcacucuuggccGGGGAcGGAGAGGc -3'
miRNA:   3'- -GUGGCU----CCuuCUC-----------CUCCUuCUUCUCC- -5'
29847 5' -52.6 NC_006273.1 + 17285 0.67 0.986235
Target:  5'- gGCgGAcGAuGAGGAGcAGGGAGAGGa -3'
miRNA:   3'- gUGgCUcCUuCUCCUCcUUCUUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.