miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2985 3' -56.2 NC_001493.1 + 43705 0.66 0.882924
Target:  5'- gCGAGGGcGGugUuugugGGAgagaccaUGGUGGGGuUGGCc -3'
miRNA:   3'- -GUUCCC-CUugA-----CCU-------ACCACCCC-ACUG- -5'
2985 3' -56.2 NC_001493.1 + 14626 0.66 0.876463
Target:  5'- -cGGGGGcGAgUGGAUGGgcgcGGGUGcCa -3'
miRNA:   3'- guUCCCC-UUgACCUACCac--CCCACuG- -5'
2985 3' -56.2 NC_001493.1 + 130181 0.66 0.876463
Target:  5'- -cGGGGGcGAgUGGAUGGgcgcGGGUGcCa -3'
miRNA:   3'- guUCCCC-UUgACCUACCac--CCCACuG- -5'
2985 3' -56.2 NC_001493.1 + 121125 0.66 0.875734
Target:  5'- gAAGGaGGAGgaGGAUuccaguaGGUGGGGcucccgGACu -3'
miRNA:   3'- gUUCC-CCUUgaCCUA-------CCACCCCa-----CUG- -5'
2985 3' -56.2 NC_001493.1 + 5570 0.66 0.875734
Target:  5'- gAAGGaGGAGgaGGAUuccaguaGGUGGGGcucccgGACu -3'
miRNA:   3'- gUUCC-CCUUgaCCUA-------CCACCCCa-----CUG- -5'
2985 3' -56.2 NC_001493.1 + 101837 0.66 0.869073
Target:  5'- -uGGcGGGAcgAUUGGG-GGUGauGGGUGACa -3'
miRNA:   3'- guUC-CCCU--UGACCUaCCAC--CCCACUG- -5'
2985 3' -56.2 NC_001493.1 + 45644 0.66 0.869073
Target:  5'- ---cGGGAACcuacagacggUGGGUGG-GGGGUcGACc -3'
miRNA:   3'- guucCCCUUG----------ACCUACCaCCCCA-CUG- -5'
2985 3' -56.2 NC_001493.1 + 9574 0.67 0.83739
Target:  5'- -uAGGGGGGCgcGGAgucgugGGUGGcGGcGGCa -3'
miRNA:   3'- guUCCCCUUGa-CCUa-----CCACC-CCaCUG- -5'
2985 3' -56.2 NC_001493.1 + 125129 0.67 0.83739
Target:  5'- -uAGGGGGGCgcGGAgucgugGGUGGcGGcGGCa -3'
miRNA:   3'- guUCCCCUUGa-CCUa-----CCACC-CCaCUG- -5'
2985 3' -56.2 NC_001493.1 + 51527 0.67 0.832362
Target:  5'- aCGAGGGGGAcCUGGAccgccacGGgagGGGGUcaauucuuuggagcgGACg -3'
miRNA:   3'- -GUUCCCCUU-GACCUa------CCa--CCCCA---------------CUG- -5'
2985 3' -56.2 NC_001493.1 + 99894 0.67 0.820372
Target:  5'- aAAGGGa---UGGAUGG-GGGGaUGACc -3'
miRNA:   3'- gUUCCCcuugACCUACCaCCCC-ACUG- -5'
2985 3' -56.2 NC_001493.1 + 84710 0.67 0.801749
Target:  5'- gCAGGcGGGu-CUGGGUGGaagcacuUGGGGUaGAUg -3'
miRNA:   3'- -GUUC-CCCuuGACCUACC-------ACCCCA-CUG- -5'
2985 3' -56.2 NC_001493.1 + 129672 0.68 0.755741
Target:  5'- -uGGGGGuGgUGG-UGGcgaugGGGGUGGCg -3'
miRNA:   3'- guUCCCCuUgACCuACCa----CCCCACUG- -5'
2985 3' -56.2 NC_001493.1 + 14117 0.68 0.755741
Target:  5'- -uGGGGGuGgUGG-UGGcgaugGGGGUGGCg -3'
miRNA:   3'- guUCCCCuUgACCuACCa----CCCCACUG- -5'
2985 3' -56.2 NC_001493.1 + 115704 0.69 0.706035
Target:  5'- cCAAGGGG-GCguggGGGUGGcGaGGGUGGg -3'
miRNA:   3'- -GUUCCCCuUGa---CCUACCaC-CCCACUg -5'
2985 3' -56.2 NC_001493.1 + 89497 0.69 0.695863
Target:  5'- --cGGGGAucuggugaUGGGUGGaUGGGG-GGCa -3'
miRNA:   3'- guuCCCCUug------ACCUACC-ACCCCaCUG- -5'
2985 3' -56.2 NC_001493.1 + 60450 0.7 0.665057
Target:  5'- -cGGGGGAAgUGGAcGGUgucgugcacggGGGGUGuCa -3'
miRNA:   3'- guUCCCCUUgACCUaCCA-----------CCCCACuG- -5'
2985 3' -56.2 NC_001493.1 + 23285 0.7 0.634003
Target:  5'- --uGGGGAGCUGGAgagguuguUGGUGGaGGgucACg -3'
miRNA:   3'- guuCCCCUUGACCU--------ACCACC-CCac-UG- -5'
2985 3' -56.2 NC_001493.1 + 102030 1.08 0.002484
Target:  5'- cCAAGGGGAACUGGAUGGUGGGGUGACc -3'
miRNA:   3'- -GUUCCCCUUGACCUACCACCCCACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.