miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2985 5' -56.2 NC_001493.1 + 27741 0.66 0.897144
Target:  5'- uCC-UCGCCUCCAcucucCGUCUCGCCcccuuGUCu -3'
miRNA:   3'- -GGuAGUGGGGGUua---GCAGGGCGG-----UAG- -5'
2985 5' -56.2 NC_001493.1 + 29146 0.66 0.897144
Target:  5'- gCCGU-GCCCCCGcguUCGgCCCGUagagCAUCg -3'
miRNA:   3'- -GGUAgUGGGGGUu--AGCaGGGCG----GUAG- -5'
2985 5' -56.2 NC_001493.1 + 124739 0.66 0.897144
Target:  5'- aCCAUCGCCac----CGUCCCGUCuUCg -3'
miRNA:   3'- -GGUAGUGGggguuaGCAGGGCGGuAG- -5'
2985 5' -56.2 NC_001493.1 + 21405 0.66 0.896492
Target:  5'- cCCGUCAucacucggUCUCCGAggCGUCCCGguaauccCCAUCc -3'
miRNA:   3'- -GGUAGU--------GGGGGUUa-GCAGGGC-------GGUAG- -5'
2985 5' -56.2 NC_001493.1 + 110393 0.66 0.896492
Target:  5'- cCCAUC-CCgggcaucguguguCCCAGUCGccacccCCCGCCAc- -3'
miRNA:   3'- -GGUAGuGG-------------GGGUUAGCa-----GGGCGGUag -5'
2985 5' -56.2 NC_001493.1 + 60254 0.66 0.89052
Target:  5'- aCCAcCACCCUCGAccUCGccaaCCCGUCAcggUCa -3'
miRNA:   3'- -GGUaGUGGGGGUU--AGCa---GGGCGGU---AG- -5'
2985 5' -56.2 NC_001493.1 + 36838 0.66 0.89052
Target:  5'- cCCAcaACCCCCAAacccauaCGUCCUacCCAUCa -3'
miRNA:   3'- -GGUagUGGGGGUUa------GCAGGGc-GGUAG- -5'
2985 5' -56.2 NC_001493.1 + 9826 0.66 0.89052
Target:  5'- gCAUCccuGCUCaCCAuAUCGUCCCaGCCAc- -3'
miRNA:   3'- gGUAG---UGGG-GGU-UAGCAGGG-CGGUag -5'
2985 5' -56.2 NC_001493.1 + 125380 0.66 0.89052
Target:  5'- gCAUCccuGCUCaCCAuAUCGUCCCaGCCAc- -3'
miRNA:   3'- gGUAG---UGGG-GGU-UAGCAGGG-CGGUag -5'
2985 5' -56.2 NC_001493.1 + 32768 0.66 0.889846
Target:  5'- gUCGUgACCCCCGAguucuacacCGUCuuauuuucggcguCUGCCAUCu -3'
miRNA:   3'- -GGUAgUGGGGGUUa--------GCAG-------------GGCGGUAG- -5'
2985 5' -56.2 NC_001493.1 + 58829 0.66 0.88367
Target:  5'- aCGgaACCCCUucgguGUCGUCCCGCgGg- -3'
miRNA:   3'- gGUagUGGGGGu----UAGCAGGGCGgUag -5'
2985 5' -56.2 NC_001493.1 + 101296 0.66 0.88367
Target:  5'- uCCGgagUACCCCCGcgAUCGUCUgugcgcucuUGCCAg- -3'
miRNA:   3'- -GGUa--GUGGGGGU--UAGCAGG---------GCGGUag -5'
2985 5' -56.2 NC_001493.1 + 48597 0.66 0.88367
Target:  5'- aCAUCACUgCgAAUCGaCCugaaCGCCGUCu -3'
miRNA:   3'- gGUAGUGGgGgUUAGCaGG----GCGGUAG- -5'
2985 5' -56.2 NC_001493.1 + 94867 0.66 0.881571
Target:  5'- gCCAUCGCCCCCGuggcacccaccgggaCGUaCCCcCgGUCg -3'
miRNA:   3'- -GGUAGUGGGGGUua-------------GCA-GGGcGgUAG- -5'
2985 5' -56.2 NC_001493.1 + 48045 0.66 0.879452
Target:  5'- --uUCACgCCCGAgaccaagacuacggCGUCCC-CCAUCa -3'
miRNA:   3'- gguAGUGgGGGUUa-------------GCAGGGcGGUAG- -5'
2985 5' -56.2 NC_001493.1 + 3182 0.66 0.876597
Target:  5'- gCCAUC-CCCgCGGcCGUCCCauccaCCAUCc -3'
miRNA:   3'- -GGUAGuGGGgGUUaGCAGGGc----GGUAG- -5'
2985 5' -56.2 NC_001493.1 + 112868 0.66 0.876597
Target:  5'- cCCAUCGagaagCCCCGggAUCG-CCCguuccuccagGCCAUCg -3'
miRNA:   3'- -GGUAGUg----GGGGU--UAGCaGGG----------CGGUAG- -5'
2985 5' -56.2 NC_001493.1 + 118736 0.66 0.876597
Target:  5'- gCCAUC-CCCgCGGcCGUCCCauccaCCAUCc -3'
miRNA:   3'- -GGUAGuGGGgGUUaGCAGGGc----GGUAG- -5'
2985 5' -56.2 NC_001493.1 + 97422 0.67 0.8618
Target:  5'- gCGUCGCUCCUGAgucuucuccCGcuUCUCGCCGUCa -3'
miRNA:   3'- gGUAGUGGGGGUUa--------GC--AGGGCGGUAG- -5'
2985 5' -56.2 NC_001493.1 + 27509 0.67 0.8618
Target:  5'- aCCGUCACggcggccgauauCCCCAGagGccaaCUCGCCGUCu -3'
miRNA:   3'- -GGUAGUG------------GGGGUUagCa---GGGCGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.