miRNA display CGI


Results 1 - 20 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 13289 0.66 0.932726
Target:  5'- uACugAGCGuGCGAGgcggguagGCUGCCGaaCGACg -3'
miRNA:   3'- -UGugUCGC-CGUUUa-------CGGCGGCg-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 48862 0.66 0.932726
Target:  5'- aGC-CAGgGGCGAGU-CCGUCGUCAc- -3'
miRNA:   3'- -UGuGUCgCCGUUUAcGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 152447 0.66 0.932726
Target:  5'- gUACaAGCGGau-GUGCuUGCCGCgCAGCu -3'
miRNA:   3'- uGUG-UCGCCguuUACG-GCGGCG-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 147786 0.66 0.932726
Target:  5'- cGCaACAGCGGCGAcgGacggCGUCGCaucauCAACa -3'
miRNA:   3'- -UG-UGUCGCCGUUuaCg---GCGGCG-----GUUG- -5'
29852 3' -56.7 NC_006273.1 + 5625 0.66 0.932726
Target:  5'- uGCGCGGUGGgGGcGUGCC-CCGCaGACc -3'
miRNA:   3'- -UGUGUCGCCgUU-UACGGcGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 233146 0.66 0.932726
Target:  5'- gGCGC-GCGGCAcg-GUccccgaCGCCGCCGGa -3'
miRNA:   3'- -UGUGuCGCCGUuuaCG------GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 38253 0.66 0.932726
Target:  5'- gGCGC-GCGGCAcg-GUccccgaCGCCGCCGGa -3'
miRNA:   3'- -UGUGuCGCCGUuuaCG------GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 221042 0.66 0.932726
Target:  5'- aGCucCGGCGGCAcaacUGCagCGCCGUCAGg -3'
miRNA:   3'- -UGu-GUCGCCGUuu--ACG--GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 136693 0.66 0.932726
Target:  5'- gACGac-CGGCcGGUcGCCGCCGCCGc- -3'
miRNA:   3'- -UGUgucGCCGuUUA-CGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 64802 0.66 0.932726
Target:  5'- gACugGGCGaCgAAGUGCCgcGCCGCCu-- -3'
miRNA:   3'- -UGugUCGCcG-UUUACGG--CGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 126858 0.66 0.932726
Target:  5'- -aGCAGCGGCGuAUGUgCGUCGgUGGCg -3'
miRNA:   3'- ugUGUCGCCGUuUACG-GCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 118342 0.66 0.932726
Target:  5'- ---aGGCGGCAAcgGCCggGCCcUCGACg -3'
miRNA:   3'- ugugUCGCCGUUuaCGG--CGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 38882 0.66 0.932229
Target:  5'- -uGCAGCGGUAca-GCCGCaccaccuCGCCcGCg -3'
miRNA:   3'- ugUGUCGCCGUuuaCGGCG-------GCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 49303 0.66 0.932228
Target:  5'- gUACGGaucaugagcuccaUGGUcuGGAUGCUGCCGCCcGCg -3'
miRNA:   3'- uGUGUC-------------GCCG--UUUACGGCGGCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 233774 0.66 0.932228
Target:  5'- -uGCAGCGGUAca-GCCGCaccaccuCGCCcGCg -3'
miRNA:   3'- ugUGUCGCCGUuuaCGGCG-------GCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 40496 0.66 0.927647
Target:  5'- ---aGGCGGCccg-GCUGCUGCCGGa -3'
miRNA:   3'- ugugUCGCCGuuuaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 112600 0.66 0.927647
Target:  5'- gGCGCAGUGcGCcGAgcaGCCGuuGCCcgggAACg -3'
miRNA:   3'- -UGUGUCGC-CGuUUa--CGGCggCGG----UUG- -5'
29852 3' -56.7 NC_006273.1 + 141768 0.66 0.927647
Target:  5'- uGCGCgaAGCuGCGcagGCCGCCGCuCAAg -3'
miRNA:   3'- -UGUG--UCGcCGUuuaCGGCGGCG-GUUg -5'
29852 3' -56.7 NC_006273.1 + 189310 0.66 0.927647
Target:  5'- uACACcGCGGCAccUGCgG-CGUCGGCg -3'
miRNA:   3'- -UGUGuCGCCGUuuACGgCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 186015 0.66 0.927647
Target:  5'- -gGCAG-GGCAcuAccGCCGCUGCCGu- -3'
miRNA:   3'- ugUGUCgCCGU--UuaCGGCGGCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.