miRNA display CGI


Results 1 - 20 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 142425 0.66 0.916796
Target:  5'- cCACGGCGGUGGAgGCCGacuccaCGUCAcACg -3'
miRNA:   3'- uGUGUCGCCGUUUaCGGCg-----GCGGU-UG- -5'
29852 3' -56.7 NC_006273.1 + 86677 0.66 0.916796
Target:  5'- cGCGCcacCGGCgAGAUGCCGCauaGgCGACg -3'
miRNA:   3'- -UGUGuc-GCCG-UUUACGGCGg--CgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 129579 0.66 0.911025
Target:  5'- uCGuCGGCGGCuccgcuAUGCCG-CGCCGGg -3'
miRNA:   3'- uGU-GUCGCCGuu----UACGGCgGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 163424 0.66 0.916796
Target:  5'- cCACAGcCGGCGuugGCC-CC-CCAGCa -3'
miRNA:   3'- uGUGUC-GCCGUuuaCGGcGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 65041 0.66 0.922336
Target:  5'- cGCACAGCuccGCgGAAUGUcacaaCGCCGCCGu- -3'
miRNA:   3'- -UGUGUCGc--CG-UUUACG-----GCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 130528 0.66 0.916796
Target:  5'- uUACAGgugagcuaCGGCAAGUGCCGgacuggccaCGCUGACa -3'
miRNA:   3'- uGUGUC--------GCCGUUUACGGCg--------GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 30670 0.66 0.922336
Target:  5'- uCGCAGCgGGCGcgccucGggGCuCGCCGgCGACa -3'
miRNA:   3'- uGUGUCG-CCGU------UuaCG-GCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 61274 0.66 0.916796
Target:  5'- aGCGCGGCGcGCGcg-GCCgagGCCGUguACa -3'
miRNA:   3'- -UGUGUCGC-CGUuuaCGG---CGGCGguUG- -5'
29852 3' -56.7 NC_006273.1 + 177464 0.66 0.916796
Target:  5'- gACGCAGgcuaguUGGCAAAgaGCCGCaCGCUGAa -3'
miRNA:   3'- -UGUGUC------GCCGUUUa-CGGCG-GCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 189795 0.66 0.922336
Target:  5'- -aGCcGCGGCcaugGCCGCCuGCaCGGCa -3'
miRNA:   3'- ugUGuCGCCGuuuaCGGCGG-CG-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 196545 0.66 0.911025
Target:  5'- gGCACcccGCGcGCGAcgcUGCUGCCucaGCCGGCg -3'
miRNA:   3'- -UGUGu--CGC-CGUUu--ACGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 17439 0.66 0.922336
Target:  5'- cACACAuaccGCGGUccacuacGCCGCCGgUAACg -3'
miRNA:   3'- -UGUGU----CGCCGuuua---CGGCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 69682 0.66 0.922336
Target:  5'- cACGCAGCaGgAGcUGaCgGCCGCCGAUc -3'
miRNA:   3'- -UGUGUCGcCgUUuAC-GgCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 38253 0.66 0.932726
Target:  5'- gGCGC-GCGGCAcg-GUccccgaCGCCGCCGGa -3'
miRNA:   3'- -UGUGuCGCCGUuuaCG------GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 79479 0.66 0.922336
Target:  5'- cGCGCA-CGGCAc--GCCGCUGCgAAa -3'
miRNA:   3'- -UGUGUcGCCGUuuaCGGCGGCGgUUg -5'
29852 3' -56.7 NC_006273.1 + 29877 0.66 0.922336
Target:  5'- cACACAGCGGUcuucuucUGCUGauCCGgCGACa -3'
miRNA:   3'- -UGUGUCGCCGuuu----ACGGC--GGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 206676 0.66 0.921247
Target:  5'- aGCAUAGCGGUgcgcagcagGUCGCCGuCCGu- -3'
miRNA:   3'- -UGUGUCGCCGuuua-----CGGCGGC-GGUug -5'
29852 3' -56.7 NC_006273.1 + 194698 0.66 0.922336
Target:  5'- gACACAGCacgccGCAAAcgcGCUGaggaCGCCGACg -3'
miRNA:   3'- -UGUGUCGc----CGUUUa--CGGCg---GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 139432 0.66 0.911025
Target:  5'- aGCGCuuGCGGCAca-G-CGCCGCCAc- -3'
miRNA:   3'- -UGUGu-CGCCGUuuaCgGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 192854 0.66 0.911025
Target:  5'- uGC-CAGaUGGCAAGUGCUGUCaaCAGCa -3'
miRNA:   3'- -UGuGUC-GCCGUUUACGGCGGcgGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.