miRNA display CGI


Results 41 - 60 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 48862 0.66 0.932726
Target:  5'- aGC-CAGgGGCGAGU-CCGUCGUCAc- -3'
miRNA:   3'- -UGuGUCgCCGUUUAcGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 86041 0.66 0.922337
Target:  5'- aACACgacaGGUGGgaccCGGAUcGUCGCCGCCAAa -3'
miRNA:   3'- -UGUG----UCGCC----GUUUA-CGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 93578 0.66 0.922337
Target:  5'- cUugAGCGGCGGcgGCCugcGCgGCCuguACc -3'
miRNA:   3'- uGugUCGCCGUUuaCGG---CGgCGGu--UG- -5'
29852 3' -56.7 NC_006273.1 + 152447 0.66 0.932726
Target:  5'- gUACaAGCGGau-GUGCuUGCCGCgCAGCu -3'
miRNA:   3'- uGUG-UCGCCguuUACG-GCGGCG-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 8025 0.66 0.910436
Target:  5'- -gGCGGCGGCAGAcccaacaUG-CGCCGaaGACa -3'
miRNA:   3'- ugUGUCGCCGUUU-------ACgGCGGCggUUG- -5'
29852 3' -56.7 NC_006273.1 + 1652 0.66 0.911025
Target:  5'- gGCACcccGCGcGCGAcgcUGCUGCCucaGCCGGCg -3'
miRNA:   3'- -UGUGu--CGC-CGUUu--ACGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 162232 0.66 0.922337
Target:  5'- -aGCGGCGGUAGAaacGUCGCaGCCAccgGCg -3'
miRNA:   3'- ugUGUCGCCGUUUa--CGGCGgCGGU---UG- -5'
29852 3' -56.7 NC_006273.1 + 189310 0.66 0.927647
Target:  5'- uACACcGCGGCAccUGCgG-CGUCGGCg -3'
miRNA:   3'- -UGUGuCGCCGUuuACGgCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 82370 0.66 0.922337
Target:  5'- uGCACGGCuuucuGGgGAcGUGUCGCgGCCAGa -3'
miRNA:   3'- -UGUGUCG-----CCgUU-UACGGCGgCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 13289 0.66 0.932726
Target:  5'- uACugAGCGuGCGAGgcggguagGCUGCCGaaCGACg -3'
miRNA:   3'- -UGugUCGC-CGUUUa-------CGGCGGCg-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 70835 0.66 0.922337
Target:  5'- gGCACGcUGGCGg--GCCGaCCGCCGc- -3'
miRNA:   3'- -UGUGUcGCCGUuuaCGGC-GGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 158862 0.66 0.916796
Target:  5'- cGCGCcgAGCGGCGAcGUGCauUCGCgCAACa -3'
miRNA:   3'- -UGUG--UCGCCGUU-UACGgcGGCG-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 38253 0.66 0.932726
Target:  5'- gGCGC-GCGGCAcg-GUccccgaCGCCGCCGGa -3'
miRNA:   3'- -UGUGuCGCCGUuuaCG------GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 130987 0.66 0.927126
Target:  5'- uCGCGGCGGguGGcGCCcgucuucGCCGUgAACa -3'
miRNA:   3'- uGUGUCGCCguUUaCGG-------CGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 102583 0.66 0.916796
Target:  5'- ----uGgGGCcGGUGCUGCCGCCGu- -3'
miRNA:   3'- uguguCgCCGuUUACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 90467 0.66 0.916796
Target:  5'- cGCGCAGCGGUucggGCgGCUugaGCgGGCg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGgCGG---CGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 64802 0.66 0.932726
Target:  5'- gACugGGCGaCgAAGUGCCgcGCCGCCu-- -3'
miRNA:   3'- -UGugUCGCcG-UUUACGG--CGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 129110 0.66 0.922337
Target:  5'- -gGCAGCu-CAugaacuUGCCGCCGcCCAACg -3'
miRNA:   3'- ugUGUCGccGUuu----ACGGCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 109078 0.66 0.916796
Target:  5'- cUACAGCGGCAAAUcaUGCaCGUCAGu -3'
miRNA:   3'- uGUGUCGCCGUUUAcgGCG-GCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 92208 0.66 0.911025
Target:  5'- cGCGCAGaCGGUgcgagcaguuggGGAUGCgGCgCGCCGu- -3'
miRNA:   3'- -UGUGUC-GCCG------------UUUACGgCG-GCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.