miRNA display CGI


Results 61 - 80 of 387 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 189310 0.66 0.927647
Target:  5'- uACACcGCGGCAccUGCgG-CGUCGGCg -3'
miRNA:   3'- -UGUGuCGCCGUuuACGgCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 69682 0.66 0.922336
Target:  5'- cACGCAGCaGgAGcUGaCgGCCGCCGAUc -3'
miRNA:   3'- -UGUGUCGcCgUUuAC-GgCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 133252 0.66 0.927647
Target:  5'- uGCugGGCauguuGGCcggaaagcccgaGGAUGCCGCCGUCucggGCg -3'
miRNA:   3'- -UGugUCG-----CCG------------UUUACGGCGGCGGu---UG- -5'
29852 3' -56.7 NC_006273.1 + 144768 0.66 0.927647
Target:  5'- gGCACGacGCGGCg---GCCGUgGCCucGCu -3'
miRNA:   3'- -UGUGU--CGCCGuuuaCGGCGgCGGu-UG- -5'
29852 3' -56.7 NC_006273.1 + 138148 0.66 0.927647
Target:  5'- gACGCGGCucauGGCGGcgGCCacgGCCuGCgGGCa -3'
miRNA:   3'- -UGUGUCG----CCGUUuaCGG---CGG-CGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 113489 0.66 0.927647
Target:  5'- uGCugGGUu-CGGAUGCCGuaGCCGGCg -3'
miRNA:   3'- -UGugUCGccGUUUACGGCggCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 8025 0.66 0.910436
Target:  5'- -gGCGGCGGCAGAcccaacaUG-CGCCGaaGACa -3'
miRNA:   3'- ugUGUCGCCGUUU-------ACgGCGGCggUUG- -5'
29852 3' -56.7 NC_006273.1 + 126858 0.66 0.932726
Target:  5'- -aGCAGCGGCGuAUGUgCGUCGgUGGCg -3'
miRNA:   3'- ugUGUCGCCGUuUACG-GCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 40496 0.66 0.927647
Target:  5'- ---aGGCGGCccg-GCUGCUGCCGGa -3'
miRNA:   3'- ugugUCGCCGuuuaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 79479 0.66 0.922336
Target:  5'- cGCGCA-CGGCAc--GCCGCUGCgAAa -3'
miRNA:   3'- -UGUGUcGCCGUuuaCGGCGGCGgUUg -5'
29852 3' -56.7 NC_006273.1 + 136693 0.66 0.932726
Target:  5'- gACGac-CGGCcGGUcGCCGCCGCCGc- -3'
miRNA:   3'- -UGUgucGCCGuUUA-CGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 87430 0.67 0.878098
Target:  5'- aACACGGCGcuacgcuGCucuagGCCGC-GCCGACg -3'
miRNA:   3'- -UGUGUCGC-------CGuuua-CGGCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 134000 0.67 0.89689
Target:  5'- uGCACgcucugucggaugaGGCaGGCGAugcgcacgGCCGCCGCCu-- -3'
miRNA:   3'- -UGUG--------------UCG-CCGUUua------CGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 94232 0.67 0.892352
Target:  5'- gGCGCAguccGCGGCAGgguuccggccGUGCUGCgGUCcGCa -3'
miRNA:   3'- -UGUGU----CGCCGUU----------UACGGCGgCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 20127 0.67 0.898801
Target:  5'- uCGCAGcCGGCAgagGAUGCaCGagaCGCgGACg -3'
miRNA:   3'- uGUGUC-GCCGU---UUACG-GCg--GCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 144143 0.67 0.892352
Target:  5'- gGguCAGCGGCAc--GCCGCCgaaGCCucGCg -3'
miRNA:   3'- -UguGUCGCCGUuuaCGGCGG---CGGu-UG- -5'
29852 3' -56.7 NC_006273.1 + 214864 0.67 0.892352
Target:  5'- uGCAUGGUGGCGAcgGUCucggcacaaaGCCGCUgcGGCg -3'
miRNA:   3'- -UGUGUCGCCGUUuaCGG----------CGGCGG--UUG- -5'
29852 3' -56.7 NC_006273.1 + 182541 0.67 0.8717
Target:  5'- cACcCGGCguucucGGCAccGGUuaCGCCGCCAACa -3'
miRNA:   3'- -UGuGUCG------CCGU--UUAcgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 133243 0.67 0.878798
Target:  5'- gUACGGUGGCGAcgGCgccacUGCCGCUg-- -3'
miRNA:   3'- uGUGUCGCCGUUuaCG-----GCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 156035 0.67 0.870979
Target:  5'- uGguCAaCGGCAuGAUGCCgugucugcccaucGCCGCCAGCa -3'
miRNA:   3'- -UguGUcGCCGU-UUACGG-------------CGGCGGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.