Results 21 - 40 of 387 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
29852 | 3' | -56.7 | NC_006273.1 | + | 42153 | 0.77 | 0.390757 |
Target: 5'- -aACGGCaGCAuuaacgccGCCGCCGCCAGCg -3' miRNA: 3'- ugUGUCGcCGUuua-----CGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 144447 | 0.77 | 0.350939 |
Target: 5'- uGCACGGCGGCGAggcggugcgcGUGCCGuuguacCCGCCuACg -3' miRNA: 3'- -UGUGUCGCCGUU----------UACGGC------GGCGGuUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 3670 | 0.76 | 0.416023 |
Target: 5'- uGCGauCAGCGGCA--UGCCGaCGCCGACc -3' miRNA: 3'- -UGU--GUCGCCGUuuACGGCgGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 72602 | 0.76 | 0.424665 |
Target: 5'- aGCgACAuGCGGCcgcUGCCGCCGCCAc- -3' miRNA: 3'- -UG-UGU-CGCCGuuuACGGCGGCGGUug -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 37036 | 0.76 | 0.442263 |
Target: 5'- aGCgAguGCGGCGAAUGCuCGCCcCCGACc -3' miRNA: 3'- -UG-UguCGCCGUUUACG-GCGGcGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 86543 | 0.76 | 0.424665 |
Target: 5'- -aGCGGCGGCAAcaGCCagcgacgaucGCCGCCGGCc -3' miRNA: 3'- ugUGUCGCCGUUuaCGG----------CGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 12401 | 0.76 | 0.433412 |
Target: 5'- cUACGGCGaGCAGAUgcgcacGCCGCUGCUAACc -3' miRNA: 3'- uGUGUCGC-CGUUUA------CGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 73745 | 0.76 | 0.424664 |
Target: 5'- -gGCGGCGGCGGccgagGCCcggcagcggcGCCGCCAGCg -3' miRNA: 3'- ugUGUCGCCGUUua---CGG----------CGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 48044 | 0.75 | 0.478653 |
Target: 5'- gACAUGGCGGUGAcggcGCCGCUGaCCGACg -3' miRNA: 3'- -UGUGUCGCCGUUua--CGGCGGC-GGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 162784 | 0.75 | 0.450316 |
Target: 5'- -gGCGGCGGCAGcggccgcAUGUCGCUGCCGc- -3' miRNA: 3'- ugUGUCGCCGUU-------UACGGCGGCGGUug -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 75565 | 0.75 | 0.460268 |
Target: 5'- aACAacuGCGGCGAcuGUGCgCGCCGCUGGCc -3' miRNA: 3'- -UGUgu-CGCCGUU--UACG-GCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 39540 | 0.75 | 0.469414 |
Target: 5'- uCACGGCGcGCAAcAUGCCGCgCGCCu-- -3' miRNA: 3'- uGUGUCGC-CGUU-UACGGCG-GCGGuug -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 139121 | 0.75 | 0.478652 |
Target: 5'- -gACGGCGGUAcuGAaGCCGCCGUCGAg -3' miRNA: 3'- ugUGUCGCCGU--UUaCGGCGGCGGUUg -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 92597 | 0.75 | 0.469415 |
Target: 5'- aGCgACGGCGGCugcUGuuGCuCGCCAGCg -3' miRNA: 3'- -UG-UGUCGCCGuuuACggCG-GCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 115503 | 0.75 | 0.477725 |
Target: 5'- gGCGCGGCGGCGAAgaaaaucgGCCGCgaauggaagcgcgCGCCAu- -3' miRNA: 3'- -UGUGUCGCCGUUUa-------CGGCG-------------GCGGUug -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 86607 | 0.75 | 0.48798 |
Target: 5'- gACGCA-CGGC----GCCGCCGCCGGCc -3' miRNA: 3'- -UGUGUcGCCGuuuaCGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 148833 | 0.74 | 0.539701 |
Target: 5'- gGC-CGGCGGCGAucgucgcuggcuguUGCCGCCGCUGccGCg -3' miRNA: 3'- -UGuGUCGCCGUUu-------------ACGGCGGCGGU--UG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 171564 | 0.74 | 0.5358 |
Target: 5'- uCACucGCGGC--GUGCCGCUGCCggUg -3' miRNA: 3'- uGUGu-CGCCGuuUACGGCGGCGGuuG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 87386 | 0.74 | 0.532881 |
Target: 5'- cCGCuuGCGGCGcaaccuccuccaccAccGCCGCCGCCGGCu -3' miRNA: 3'- uGUGu-CGCCGU--------------UuaCGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 162394 | 0.74 | 0.545569 |
Target: 5'- -gGCGGCGGCGGGaGCgGCgGUCAGCa -3' miRNA: 3'- ugUGUCGCCGUUUaCGgCGgCGGUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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