miRNA display CGI


Results 1 - 20 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 111250 1.1 0.0029
Target:  5'- gACACAGCGGCAAAUGCCGCCGCCAACg -3'
miRNA:   3'- -UGUGUCGCCGUUUACGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 39973 0.82 0.196049
Target:  5'- cACACGGUguuucGGCAGAUGCaCGCCGCCGGa -3'
miRNA:   3'- -UGUGUCG-----CCGUUUACG-GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 149599 0.82 0.200897
Target:  5'- -gGCGGCGGUcuAGAUGCCGCUGCCGGg -3'
miRNA:   3'- ugUGUCGCCG--UUUACGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 102137 0.81 0.210905
Target:  5'- uCGCAGCGGCAGuggcGCCGUCGCCAc- -3'
miRNA:   3'- uGUGUCGCCGUUua--CGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 75453 0.81 0.22672
Target:  5'- -aGCuGCGGCGGA-GCCGUCGCCGGCa -3'
miRNA:   3'- ugUGuCGCCGUUUaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 87530 0.8 0.261361
Target:  5'- aGCGCGGCGGCGgucucugucucuGGUGCCGCggCGCUAACc -3'
miRNA:   3'- -UGUGUCGCCGU------------UUACGGCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 45891 0.8 0.267537
Target:  5'- aGCGCGGCGGCcgg-GCCGCCgagGCCGAUg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 122245 0.79 0.286771
Target:  5'- gACugAGCGGCGcgcccucuGcgGCCGCCGCCuuACa -3'
miRNA:   3'- -UGugUCGCCGU--------UuaCGGCGGCGGu-UG- -5'
29852 3' -56.7 NC_006273.1 + 49374 0.79 0.286771
Target:  5'- -gGCAGCGGCGguAGUGCC-CUGCCGACc -3'
miRNA:   3'- ugUGUCGCCGU--UUACGGcGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 153791 0.79 0.29342
Target:  5'- cCGCcGCGGCcGcgGCCGCCGCCuGCg -3'
miRNA:   3'- uGUGuCGCCGuUuaCGGCGGCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 145121 0.79 0.29342
Target:  5'- -gGCAGCccgGGCGAuucGCCGCCGCCGAUa -3'
miRNA:   3'- ugUGUCG---CCGUUua-CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 103029 0.79 0.293421
Target:  5'- cCGCGGCGGCAGcgGCCGCgGCUucCa -3'
miRNA:   3'- uGUGUCGCCGUUuaCGGCGgCGGuuG- -5'
29852 3' -56.7 NC_006273.1 + 212017 0.78 0.314088
Target:  5'- gAUGCGGCaGGCGAAUGCgcaGCCGCUGACa -3'
miRNA:   3'- -UGUGUCG-CCGUUUACGg--CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 90291 0.78 0.321218
Target:  5'- cCGCAgGUGGUGAucagcGCCGCCGCCAGCg -3'
miRNA:   3'- uGUGU-CGCCGUUua---CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 135873 0.78 0.335838
Target:  5'- -aACAGCaGCAGccGCCGCCGCCAc- -3'
miRNA:   3'- ugUGUCGcCGUUuaCGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 193235 0.78 0.335838
Target:  5'- -gGCGGCGGCGuuAAUGCUGCCGUUGAUg -3'
miRNA:   3'- ugUGUCGCCGU--UUACGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 17603 0.78 0.335838
Target:  5'- gAUACAGCGGU--AUGCuCGCCGCCGc- -3'
miRNA:   3'- -UGUGUCGCCGuuUACG-GCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 124138 0.78 0.335838
Target:  5'- -gGCGGCGGCAuuUGCCGCUguGUCGGCu -3'
miRNA:   3'- ugUGUCGCCGUuuACGGCGG--CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 196856 0.77 0.348643
Target:  5'- uGCGCGGCGGgGccggcgacggggacGAcGUCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUCGCCgU--------------UUaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 144447 0.77 0.350939
Target:  5'- uGCACGGCGGCGAggcggugcgcGUGCCGuuguacCCGCCuACg -3'
miRNA:   3'- -UGUGUCGCCGUU----------UACGGC------GGCGGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.