miRNA display CGI


Results 21 - 40 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 85790 0.77 0.358668
Target:  5'- -gGCAGCGGCAucuaGaCCGCCGCCAcucGCg -3'
miRNA:   3'- ugUGUCGCCGUuua-C-GGCGGCGGU---UG- -5'
29852 3' -56.7 NC_006273.1 + 42153 0.77 0.390757
Target:  5'- -aACGGCaGCAuuaacgccGCCGCCGCCAGCg -3'
miRNA:   3'- ugUGUCGcCGUuua-----CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 3670 0.76 0.416023
Target:  5'- uGCGauCAGCGGCA--UGCCGaCGCCGACc -3'
miRNA:   3'- -UGU--GUCGCCGUuuACGGCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 73745 0.76 0.424664
Target:  5'- -gGCGGCGGCGGccgagGCCcggcagcggcGCCGCCAGCg -3'
miRNA:   3'- ugUGUCGCCGUUua---CGG----------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 72602 0.76 0.424665
Target:  5'- aGCgACAuGCGGCcgcUGCCGCCGCCAc- -3'
miRNA:   3'- -UG-UGU-CGCCGuuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 86543 0.76 0.424665
Target:  5'- -aGCGGCGGCAAcaGCCagcgacgaucGCCGCCGGCc -3'
miRNA:   3'- ugUGUCGCCGUUuaCGG----------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 12401 0.76 0.433412
Target:  5'- cUACGGCGaGCAGAUgcgcacGCCGCUGCUAACc -3'
miRNA:   3'- uGUGUCGC-CGUUUA------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 37036 0.76 0.442263
Target:  5'- aGCgAguGCGGCGAAUGCuCGCCcCCGACc -3'
miRNA:   3'- -UG-UguCGCCGUUUACG-GCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 162784 0.75 0.450316
Target:  5'- -gGCGGCGGCAGcggccgcAUGUCGCUGCCGc- -3'
miRNA:   3'- ugUGUCGCCGUU-------UACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 75565 0.75 0.460268
Target:  5'- aACAacuGCGGCGAcuGUGCgCGCCGCUGGCc -3'
miRNA:   3'- -UGUgu-CGCCGUU--UACG-GCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 39540 0.75 0.469414
Target:  5'- uCACGGCGcGCAAcAUGCCGCgCGCCu-- -3'
miRNA:   3'- uGUGUCGC-CGUU-UACGGCG-GCGGuug -5'
29852 3' -56.7 NC_006273.1 + 92597 0.75 0.469415
Target:  5'- aGCgACGGCGGCugcUGuuGCuCGCCAGCg -3'
miRNA:   3'- -UG-UGUCGCCGuuuACggCG-GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 115503 0.75 0.477725
Target:  5'- gGCGCGGCGGCGAAgaaaaucgGCCGCgaauggaagcgcgCGCCAu- -3'
miRNA:   3'- -UGUGUCGCCGUUUa-------CGGCG-------------GCGGUug -5'
29852 3' -56.7 NC_006273.1 + 139121 0.75 0.478652
Target:  5'- -gACGGCGGUAcuGAaGCCGCCGUCGAg -3'
miRNA:   3'- ugUGUCGCCGU--UUaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 48044 0.75 0.478653
Target:  5'- gACAUGGCGGUGAcggcGCCGCUGaCCGACg -3'
miRNA:   3'- -UGUGUCGCCGUUua--CGGCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 86607 0.75 0.48798
Target:  5'- gACGCA-CGGC----GCCGCCGCCGGCc -3'
miRNA:   3'- -UGUGUcGCCGuuuaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 101879 0.74 0.494559
Target:  5'- aGCGUAGuCGGCuaacaaagcccggGCCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUC-GCCGuuua---------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 8272 0.74 0.497392
Target:  5'- -gGCAGCGGCGcAUacccacGCCGCCGUgGGCg -3'
miRNA:   3'- ugUGUCGCCGUuUA------CGGCGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 197071 0.74 0.506884
Target:  5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 190575 0.74 0.506884
Target:  5'- cUACAGCGGC---UGCCGagucacguCCGCCGGCg -3'
miRNA:   3'- uGUGUCGCCGuuuACGGC--------GGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.