miRNA display CGI


Results 41 - 60 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 197071 0.74 0.506884
Target:  5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 58871 0.74 0.506884
Target:  5'- aGCACGGCGGCAGcacaCGCUGUCGGCc -3'
miRNA:   3'- -UGUGUCGCCGUUuacgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 164531 0.74 0.515492
Target:  5'- aACACguuguugagggagGGCGGCGGcgGUCGgcCCGCCAGCg -3'
miRNA:   3'- -UGUG-------------UCGCCGUUuaCGGC--GGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 154925 0.74 0.516453
Target:  5'- ---aAGCGGCAGuacGCCGCCGCCu-- -3'
miRNA:   3'- ugugUCGCCGUUua-CGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 188257 0.74 0.526093
Target:  5'- uCGCAGCuGCAAGUGUCGCaguGUCAACa -3'
miRNA:   3'- uGUGUCGcCGUUUACGGCGg--CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 72267 0.74 0.526093
Target:  5'- gACACcagAGCGGCAggucGAUGaCGCUGCCGAUg -3'
miRNA:   3'- -UGUG---UCGCCGU----UUACgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 123283 0.74 0.526093
Target:  5'- cCAC-GCGGCcccgAGAUGCCGCCuuccacucgauGCCAGCa -3'
miRNA:   3'- uGUGuCGCCG----UUUACGGCGG-----------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 167318 0.74 0.526093
Target:  5'- cCACAGCGGCGGcaGCgGCgGCCAcgGCg -3'
miRNA:   3'- uGUGUCGCCGUUuaCGgCGgCGGU--UG- -5'
29852 3' -56.7 NC_006273.1 + 87386 0.74 0.532881
Target:  5'- cCGCuuGCGGCGcaaccuccuccaccAccGCCGCCGCCGGCu -3'
miRNA:   3'- uGUGu-CGCCGU--------------UuaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 1995 0.74 0.533854
Target:  5'- cGCGcCAGCGGCGAGcgGCacggagacggagGCCGCCGGCg -3'
miRNA:   3'- -UGU-GUCGCCGUUUa-CGg-----------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 171564 0.74 0.5358
Target:  5'- uCACucGCGGC--GUGCCGCUGCCggUg -3'
miRNA:   3'- uGUGu-CGCCGuuUACGGCGGCGGuuG- -5'
29852 3' -56.7 NC_006273.1 + 167257 0.74 0.5358
Target:  5'- gGCGCAGCGaGCGAucuaGCCGCuCGCUAGu -3'
miRNA:   3'- -UGUGUCGC-CGUUua--CGGCG-GCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 148833 0.74 0.539701
Target:  5'- gGC-CGGCGGCGAucgucgcuggcuguUGCCGCCGCUGccGCg -3'
miRNA:   3'- -UGuGUCGCCGUUu-------------ACGGCGGCGGU--UG- -5'
29852 3' -56.7 NC_006273.1 + 162394 0.74 0.545569
Target:  5'- -gGCGGCGGCGGGaGCgGCgGUCAGCa -3'
miRNA:   3'- ugUGUCGCCGUUUaCGgCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 93491 0.74 0.54557
Target:  5'- uCAgGGUGGuCAAAguggugacGCCGCCGCCGGCc -3'
miRNA:   3'- uGUgUCGCC-GUUUa-------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 21488 0.73 0.55441
Target:  5'- cACGCAGCGGuCAGGUGUuacacaaCGaCGCCAGCu -3'
miRNA:   3'- -UGUGUCGCC-GUUUACG-------GCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 200969 0.73 0.565272
Target:  5'- cACACGGCGGUuuc-GCCaCCGCUGACg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGcGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 227690 0.73 0.565273
Target:  5'- -uGCcGCGGCcacUGCCGCCGCCGc- -3'
miRNA:   3'- ugUGuCGCCGuuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 20510 0.73 0.565273
Target:  5'- cCGCAGCGGCuuuGUGCCgagaccGUCGCCAc- -3'
miRNA:   3'- uGUGUCGCCGuu-UACGG------CGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 166666 0.73 0.575194
Target:  5'- -gACAGCGGCAAGUggggcGCCGCgaucgaaggguaCGUCAACa -3'
miRNA:   3'- ugUGUCGCCGUUUA-----CGGCG------------GCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.