miRNA display CGI


Results 61 - 80 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 193322 0.73 0.575194
Target:  5'- aACGuCAGCaGCAAccGCCGCCcCCGACa -3'
miRNA:   3'- -UGU-GUCGcCGUUuaCGGCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 227111 0.73 0.585155
Target:  5'- cCACGGCGGCGuggguaugcGCCGCUGCCc-- -3'
miRNA:   3'- uGUGUCGCCGUuua------CGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 91973 0.73 0.585156
Target:  5'- aACGC-GCGGCAg--GCCGC-GCCGGCg -3'
miRNA:   3'- -UGUGuCGCCGUuuaCGGCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 93305 0.73 0.585156
Target:  5'- aGCGCAagccGUGGUAAccGUCGCCGCUGGCg -3'
miRNA:   3'- -UGUGU----CGCCGUUuaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 43837 0.73 0.589149
Target:  5'- uGCACAGUaGGCuu-UGCCaccguagcccugaucGCCGCCGACc -3'
miRNA:   3'- -UGUGUCG-CCGuuuACGG---------------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 227426 0.73 0.595149
Target:  5'- gGCucaGGCGGCcu-UGUCGCCGCCAc- -3'
miRNA:   3'- -UGug-UCGCCGuuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 173803 0.73 0.59515
Target:  5'- cGCGCGGUGGCcaAAcgGCCGCgcgacccgGCCGACg -3'
miRNA:   3'- -UGUGUCGCCG--UUuaCGGCGg-------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 164235 0.73 0.601159
Target:  5'- uGCGCGGCgacggguGGCAggacuugaguaccaAGUGCCGCCGUCGGu -3'
miRNA:   3'- -UGUGUCG-------CCGU--------------UUACGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 117440 0.73 0.605169
Target:  5'- cUACcGUGGCAGGUG-CGUCGCCGGCu -3'
miRNA:   3'- uGUGuCGCCGUUUACgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 206850 0.72 0.614205
Target:  5'- cGCGCAGUGGC--GUGCuacguauCGCgGCCGACu -3'
miRNA:   3'- -UGUGUCGCCGuuUACG-------GCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 167180 0.72 0.615209
Target:  5'- cCACGGCGggcGCAGcgGCCGCggagGCCGGCg -3'
miRNA:   3'- uGUGUCGC---CGUUuaCGGCGg---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 30599 0.72 0.615209
Target:  5'- gAC-CGGCGGCAcc-GgCGCCGCCAAg -3'
miRNA:   3'- -UGuGUCGCCGUuuaCgGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 233043 0.72 0.62526
Target:  5'- cGCGCAGaaaGuGCGAcagcuCCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUCg--C-CGUUuac--GGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 38150 0.72 0.625261
Target:  5'- cGCGCAGaaaGuGCGAcagcuCCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUCg--C-CGUUuac--GGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 46266 0.72 0.625261
Target:  5'- gACACGGUacuGCAucaGCCGCCGCCAu- -3'
miRNA:   3'- -UGUGUCGc--CGUuuaCGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 221800 0.72 0.629283
Target:  5'- aGCACGGCGGCccggGCCGCCcggcgggugagcacCCGGCg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGCGGc-------------GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 148652 0.72 0.629283
Target:  5'- gACGCGGCGGCugaggugcucucguGGUGCgGCCuGcCCGACa -3'
miRNA:   3'- -UGUGUCGCCGu-------------UUACGgCGG-C-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 155911 0.72 0.635318
Target:  5'- uCGCAGCGGC--GUGCCGUgCGCgAAUg -3'
miRNA:   3'- uGUGUCGCCGuuUACGGCG-GCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 204179 0.72 0.645372
Target:  5'- cCGCAGCGGCAAccaggGCagccuggaCGCCGgCCGGCa -3'
miRNA:   3'- uGUGUCGCCGUUua---CG--------GCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 7700 0.72 0.645372
Target:  5'- -gGCGGCGGCAGugGCCGCgG-CAGCg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGGCGgCgGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.