miRNA display CGI


Results 21 - 40 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 138148 0.66 0.927647
Target:  5'- gACGCGGCucauGGCGGcgGCCacgGCCuGCgGGCa -3'
miRNA:   3'- -UGUGUCG----CCGUUuaCGG---CGG-CGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 113489 0.66 0.927647
Target:  5'- uGCugGGUu-CGGAUGCCGuaGCCGGCg -3'
miRNA:   3'- -UGugUCGccGUUUACGGCggCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 141768 0.66 0.927647
Target:  5'- uGCGCgaAGCuGCGcagGCCGCCGCuCAAg -3'
miRNA:   3'- -UGUG--UCGcCGUuuaCGGCGGCG-GUUg -5'
29852 3' -56.7 NC_006273.1 + 189310 0.66 0.927647
Target:  5'- uACACcGCGGCAccUGCgG-CGUCGGCg -3'
miRNA:   3'- -UGUGuCGCCGUuuACGgCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 133252 0.66 0.927647
Target:  5'- uGCugGGCauguuGGCcggaaagcccgaGGAUGCCGCCGUCucggGCg -3'
miRNA:   3'- -UGugUCG-----CCG------------UUUACGGCGGCGGu---UG- -5'
29852 3' -56.7 NC_006273.1 + 80948 0.66 0.927647
Target:  5'- -gGCuGCGGCGA--GUCGCCcagcgggucgGCCAGCu -3'
miRNA:   3'- ugUGuCGCCGUUuaCGGCGG----------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 40496 0.66 0.927647
Target:  5'- ---aGGCGGCccg-GCUGCUGCCGGa -3'
miRNA:   3'- ugugUCGCCGuuuaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 186015 0.66 0.927647
Target:  5'- -gGCAG-GGCAcuAccGCCGCUGCCGu- -3'
miRNA:   3'- ugUGUCgCCGU--UuaCGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 112600 0.66 0.927647
Target:  5'- gGCGCAGUGcGCcGAgcaGCCGuuGCCcgggAACg -3'
miRNA:   3'- -UGUGUCGC-CGuUUa--CGGCggCGG----UUG- -5'
29852 3' -56.7 NC_006273.1 + 189501 0.66 0.927647
Target:  5'- ---gGGCGGCccg-GCCGCCGCg--- -3'
miRNA:   3'- ugugUCGCCGuuuaCGGCGGCGguug -5'
29852 3' -56.7 NC_006273.1 + 130987 0.66 0.927126
Target:  5'- uCGCGGCGGguGGcGCCcgucuucGCCGUgAACa -3'
miRNA:   3'- uGUGUCGCCguUUaCGG-------CGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 177528 0.66 0.926078
Target:  5'- aAC-CGGCGGCGuugaacGugguccuuuuguugGUGCCGCCG-CGACg -3'
miRNA:   3'- -UGuGUCGCCGU------U--------------UACGGCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 86041 0.66 0.922337
Target:  5'- aACACgacaGGUGGgaccCGGAUcGUCGCCGCCAAa -3'
miRNA:   3'- -UGUG----UCGCC----GUUUA-CGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 162232 0.66 0.922337
Target:  5'- -aGCGGCGGUAGAaacGUCGCaGCCAccgGCg -3'
miRNA:   3'- ugUGUCGCCGUUUa--CGGCGgCGGU---UG- -5'
29852 3' -56.7 NC_006273.1 + 160126 0.66 0.922337
Target:  5'- ---aGGCGGCcGccGCgGCgGCCAGCg -3'
miRNA:   3'- ugugUCGCCGuUuaCGgCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 234636 0.66 0.922337
Target:  5'- gACACAGCacgccGCAAAcgcGCUGaggaCGCCGACg -3'
miRNA:   3'- -UGUGUCGc----CGUUUa--CGGCg---GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 70835 0.66 0.922337
Target:  5'- gGCACGcUGGCGg--GCCGaCCGCCGc- -3'
miRNA:   3'- -UGUGUcGCCGUuuaCGGC-GGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 82370 0.66 0.922337
Target:  5'- uGCACGGCuuucuGGgGAcGUGUCGCgGCCAGa -3'
miRNA:   3'- -UGUGUCG-----CCgUU-UACGGCGgCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 129110 0.66 0.922337
Target:  5'- -gGCAGCu-CAugaacuUGCCGCCGcCCAACg -3'
miRNA:   3'- ugUGUCGccGUuu----ACGGCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 93578 0.66 0.922337
Target:  5'- cUugAGCGGCGGcgGCCugcGCgGCCuguACc -3'
miRNA:   3'- uGugUCGCCGUUuaCGG---CGgCGGu--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.