miRNA display CGI


Results 61 - 80 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 41566 0.66 0.916796
Target:  5'- cCACAGCauGCGc-UGUCGCCGCCGc- -3'
miRNA:   3'- uGUGUCGc-CGUuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 158862 0.66 0.916796
Target:  5'- cGCGCcgAGCGGCGAcGUGCauUCGCgCAACa -3'
miRNA:   3'- -UGUG--UCGCCGUU-UACGgcGGCG-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 102583 0.66 0.916796
Target:  5'- ----uGgGGCcGGUGCUGCCGCCGu- -3'
miRNA:   3'- uguguCgCCGuUUACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 201155 0.66 0.916796
Target:  5'- uGC-CGGCGGCccuGUGCCGCggguugccCGUCAAg -3'
miRNA:   3'- -UGuGUCGCCGuu-UACGGCG--------GCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 139432 0.66 0.911025
Target:  5'- aGCGCuuGCGGCAca-G-CGCCGCCAc- -3'
miRNA:   3'- -UGUGu-CGCCGUuuaCgGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 129579 0.66 0.911025
Target:  5'- uCGuCGGCGGCuccgcuAUGCCG-CGCCGGg -3'
miRNA:   3'- uGU-GUCGCCGuu----UACGGCgGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 192854 0.66 0.911025
Target:  5'- uGC-CAGaUGGCAAGUGCUGUCaaCAGCa -3'
miRNA:   3'- -UGuGUC-GCCGUUUACGGCGGcgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 196545 0.66 0.911025
Target:  5'- gGCACcccGCGcGCGAcgcUGCUGCCucaGCCGGCg -3'
miRNA:   3'- -UGUGu--CGC-CGUUu--ACGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 92208 0.66 0.911025
Target:  5'- cGCGCAGaCGGUgcgagcaguuggGGAUGCgGCgCGCCGu- -3'
miRNA:   3'- -UGUGUC-GCCG------------UUUACGgCG-GCGGUug -5'
29852 3' -56.7 NC_006273.1 + 1652 0.66 0.911025
Target:  5'- gGCACcccGCGcGCGAcgcUGCUGCCucaGCCGGCg -3'
miRNA:   3'- -UGUGu--CGC-CGUUu--ACGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 8025 0.66 0.910436
Target:  5'- -gGCGGCGGCAGAcccaacaUG-CGCCGaaGACa -3'
miRNA:   3'- ugUGUCGCCGUUU-------ACgGCGGCggUUG- -5'
29852 3' -56.7 NC_006273.1 + 194897 0.67 0.905026
Target:  5'- -gGCAGCaGCcgg-GCCGCCucgaccacGCCGACg -3'
miRNA:   3'- ugUGUCGcCGuuuaCGGCGG--------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 175364 0.67 0.905026
Target:  5'- aGC-CGGC-GCGGGaGCUGCCGuCCGACa -3'
miRNA:   3'- -UGuGUCGcCGUUUaCGGCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 162999 0.67 0.905026
Target:  5'- -gACGGCGGCAGcUGCgGCgGUagGACa -3'
miRNA:   3'- ugUGUCGCCGUUuACGgCGgCGg-UUG- -5'
29852 3' -56.7 NC_006273.1 + 106138 0.67 0.905026
Target:  5'- gAC-CAGCGGCuug-GCCGCgG-CGGCg -3'
miRNA:   3'- -UGuGUCGCCGuuuaCGGCGgCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 71884 0.67 0.905026
Target:  5'- -uGCGGCGGCAAcgGgCGCgacaCCGGCg -3'
miRNA:   3'- ugUGUCGCCGUUuaCgGCGgc--GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 172194 0.67 0.905026
Target:  5'- -aGCGGaGGCAAAggcgagGCCGC-GCCGGCc -3'
miRNA:   3'- ugUGUCgCCGUUUa-----CGGCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 36446 0.67 0.905026
Target:  5'- gUugGGCGGCAGggGCaUGCgGCCuuAGCg -3'
miRNA:   3'- uGugUCGCCGUUuaCG-GCGgCGG--UUG- -5'
29852 3' -56.7 NC_006273.1 + 74565 0.67 0.905026
Target:  5'- aGCAUcGCcGCAGcAUGCCGCC-CCAAUc -3'
miRNA:   3'- -UGUGuCGcCGUU-UACGGCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 90979 0.67 0.905026
Target:  5'- cCGCcGCGGCGccggGCagacaGCCGCUGACg -3'
miRNA:   3'- uGUGuCGCCGUuua-CGg----CGGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.