miRNA display CGI


Results 81 - 100 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 194897 0.67 0.905026
Target:  5'- -gGCAGCaGCcgg-GCCGCCucgaccacGCCGACg -3'
miRNA:   3'- ugUGUCGcCGuuuaCGGCGG--------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 204713 0.67 0.905026
Target:  5'- gGCACcGCGGCcg--GCCGCaggaaGCCGc- -3'
miRNA:   3'- -UGUGuCGCCGuuuaCGGCGg----CGGUug -5'
29852 3' -56.7 NC_006273.1 + 163911 0.67 0.905026
Target:  5'- aGCGaggaGGCuGCGAucGCCGCCGCCu-- -3'
miRNA:   3'- -UGUg---UCGcCGUUuaCGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 36698 0.67 0.905026
Target:  5'- -aGCAGCGaacGUAGGUaGCgGCCGCgAGCg -3'
miRNA:   3'- ugUGUCGC---CGUUUA-CGgCGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 42063 0.67 0.905026
Target:  5'- --uCGGgGGCGGcgGuuGCUGCUGACg -3'
miRNA:   3'- uguGUCgCCGUUuaCggCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 40334 0.67 0.905026
Target:  5'- cUACGGCGGCGAuccCCGUCGagCGGCg -3'
miRNA:   3'- uGUGUCGCCGUUuacGGCGGCg-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 196897 0.67 0.905026
Target:  5'- -gGCgAGCGGCAcgGAgacgGagGCCGCCGGCg -3'
miRNA:   3'- ugUG-UCGCCGU--UUa---CggCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 196212 0.67 0.905026
Target:  5'- uACGC-GCGGguGAcGCCGCgcaGCCAGa -3'
miRNA:   3'- -UGUGuCGCCguUUaCGGCGg--CGGUUg -5'
29852 3' -56.7 NC_006273.1 + 172194 0.67 0.905026
Target:  5'- -aGCGGaGGCAAAggcgagGCCGC-GCCGGCc -3'
miRNA:   3'- ugUGUCgCCGUUUa-----CGGCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 162999 0.67 0.905026
Target:  5'- -gACGGCGGCAGcUGCgGCgGUagGACa -3'
miRNA:   3'- ugUGUCGCCGUUuACGgCGgCGg-UUG- -5'
29852 3' -56.7 NC_006273.1 + 175364 0.67 0.905026
Target:  5'- aGC-CGGC-GCGGGaGCUGCCGuCCGACa -3'
miRNA:   3'- -UGuGUCGcCGUUUaCGGCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 154350 0.67 0.898801
Target:  5'- uACGacuGGCGGCAGcaggGUCGCgCGUCGACu -3'
miRNA:   3'- -UGUg--UCGCCGUUua--CGGCG-GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 121873 0.67 0.898801
Target:  5'- cGCGC-GCcccccgGGCAAc--CCGCCGCCGGCu -3'
miRNA:   3'- -UGUGuCG------CCGUUuacGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 195846 0.67 0.898801
Target:  5'- gGCGC-GCGGCAuguUGCgCGCCGUgAu- -3'
miRNA:   3'- -UGUGuCGCCGUuu-ACG-GCGGCGgUug -5'
29852 3' -56.7 NC_006273.1 + 102418 0.67 0.898801
Target:  5'- -aACAGCGGCAacagacggcGAUGCaugaaauaGCCGUCGu- -3'
miRNA:   3'- ugUGUCGCCGU---------UUACGg-------CGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 153204 0.67 0.898801
Target:  5'- cCACGGCGGCu----CCGCCuuacaCCAACg -3'
miRNA:   3'- uGUGUCGCCGuuuacGGCGGc----GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 35896 0.67 0.898801
Target:  5'- -uGCAGCGGCg---GCCaGCacagcgggaGCCAACg -3'
miRNA:   3'- ugUGUCGCCGuuuaCGG-CGg--------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 147612 0.67 0.898801
Target:  5'- aACGCAGcCGGU---UGUaaCCGCCAGCa -3'
miRNA:   3'- -UGUGUC-GCCGuuuACGgcGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 174906 0.67 0.898801
Target:  5'- -gACGGaggaaucguCGGCAGAgGUCGCCGCUGAUa -3'
miRNA:   3'- ugUGUC---------GCCGUUUaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 41508 0.67 0.898801
Target:  5'- gGCGuCGGCgugaggauGGCAGc-GCCGgCGCCAGCa -3'
miRNA:   3'- -UGU-GUCG--------CCGUUuaCGGCgGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.