miRNA display CGI


Results 1 - 20 of 387 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 895 0.68 0.849185
Target:  5'- aGCGCAaCGGCA--UGUCGCCGCg--- -3'
miRNA:   3'- -UGUGUcGCCGUuuACGGCGGCGguug -5'
29852 3' -56.7 NC_006273.1 + 1268 0.68 0.849185
Target:  5'- uCGCAGCgcgacgcgGGCAcgcUGCUGCCGCUcgGACg -3'
miRNA:   3'- uGUGUCG--------CCGUuu-ACGGCGGCGG--UUG- -5'
29852 3' -56.7 NC_006273.1 + 1319 0.67 0.905026
Target:  5'- uACGC-GCGGguGAcGCCGCgcaGCCAGa -3'
miRNA:   3'- -UGUGuCGCCguUUaCGGCGg--CGGUUg -5'
29852 3' -56.7 NC_006273.1 + 1652 0.66 0.911025
Target:  5'- gGCACcccGCGcGCGAcgcUGCUGCCucaGCCGGCg -3'
miRNA:   3'- -UGUGu--CGC-CGUUu--ACGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 1995 0.74 0.533854
Target:  5'- cGCGcCAGCGGCGAGcgGCacggagacggagGCCGCCGGCg -3'
miRNA:   3'- -UGU-GUCGCCGUUUa-CGg-----------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 2178 0.74 0.506884
Target:  5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 2236 0.7 0.724763
Target:  5'- --cCGGCGGCGucggggaccGUGCCGCgCGCCAu- -3'
miRNA:   3'- uguGUCGCCGUu--------UACGGCG-GCGGUug -5'
29852 3' -56.7 NC_006273.1 + 2396 0.68 0.82496
Target:  5'- gGCGCgAGuCGGCGc---CCGCCGCCGAg -3'
miRNA:   3'- -UGUG-UC-GCCGUuuacGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 2424 0.7 0.744012
Target:  5'- cGCGCGGCGGC---UGCUGCC-CgAGCu -3'
miRNA:   3'- -UGUGUCGCCGuuuACGGCGGcGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 3437 0.68 0.82496
Target:  5'- -uGCAGaaCGGCGAcggagaggagcGUGuCCGCCGCCGGg -3'
miRNA:   3'- ugUGUC--GCCGUU-----------UAC-GGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 3670 0.76 0.416023
Target:  5'- uGCGauCAGCGGCA--UGCCGaCGCCGACc -3'
miRNA:   3'- -UGU--GUCGCCGUuuACGGCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 4624 0.68 0.864395
Target:  5'- gAUACAGgcCGGCGGGUaagguaccggaGCCcccagacagGCCGCCGACa -3'
miRNA:   3'- -UGUGUC--GCCGUUUA-----------CGG---------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 5625 0.66 0.932726
Target:  5'- uGCGCGGUGGgGGcGUGCC-CCGCaGACc -3'
miRNA:   3'- -UGUGUCGCCgUU-UACGGcGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 5821 0.69 0.807953
Target:  5'- cCACAGaCGGUguaaccgccgcAucUGUCGCCGCCAAUu -3'
miRNA:   3'- uGUGUC-GCCG-----------UuuACGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 6915 0.7 0.772156
Target:  5'- -aACGGCGuGCAGccGCCGagcCCGUCGACg -3'
miRNA:   3'- ugUGUCGC-CGUUuaCGGC---GGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 7647 0.69 0.799214
Target:  5'- -uGCGGCGGCGAAgacaGCUGCgauuugucgGCCGACa -3'
miRNA:   3'- ugUGUCGCCGUUUa---CGGCGg--------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 7700 0.72 0.645372
Target:  5'- -gGCGGCGGCAGugGCCGCgG-CAGCg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGGCGgCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 8025 0.66 0.910436
Target:  5'- -gGCGGCGGCAGAcccaacaUG-CGCCGaaGACa -3'
miRNA:   3'- ugUGUCGCCGUUU-------ACgGCGGCggUUG- -5'
29852 3' -56.7 NC_006273.1 + 8272 0.74 0.497392
Target:  5'- -gGCAGCGGCGcAUacccacGCCGCCGUgGGCg -3'
miRNA:   3'- ugUGUCGCCGUuUA------CGGCGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 8314 0.68 0.864395
Target:  5'- gACGCGGC-GCAccAAUGCCgaauccaagaGCCGCCGu- -3'
miRNA:   3'- -UGUGUCGcCGU--UUACGG----------CGGCGGUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.