miRNA display CGI


Results 21 - 40 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 12401 0.76 0.433412
Target:  5'- cUACGGCGaGCAGAUgcgcacGCCGCUGCUAACc -3'
miRNA:   3'- uGUGUCGC-CGUUUA------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 13289 0.66 0.932726
Target:  5'- uACugAGCGuGCGAGgcggguagGCUGCCGaaCGACg -3'
miRNA:   3'- -UGugUCGC-CGUUUa-------CGGCGGCg-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 17439 0.66 0.922336
Target:  5'- cACACAuaccGCGGUccacuacGCCGCCGgUAACg -3'
miRNA:   3'- -UGUGU----CGCCGuuua---CGGCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 17603 0.78 0.335838
Target:  5'- gAUACAGCGGU--AUGCuCGCCGCCGc- -3'
miRNA:   3'- -UGUGUCGCCGuuUACG-GCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 17786 0.66 0.920699
Target:  5'- -gACGGCuuugccGGCAugucccuacucaccAAaGCCGCCGCCGAa -3'
miRNA:   3'- ugUGUCG------CCGU--------------UUaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 18662 0.69 0.816537
Target:  5'- uGCcCAGCGGCA--UGgUGCUGCuCGACa -3'
miRNA:   3'- -UGuGUCGCCGUuuACgGCGGCG-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 19055 0.67 0.885684
Target:  5'- uCACAGCGuCGAAa--CGCUGCCGGCg -3'
miRNA:   3'- uGUGUCGCcGUUUacgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 19420 0.7 0.724763
Target:  5'- aGCGCGGcCGGCGAgcaaaagccAUGCaCGCcCGCgGACa -3'
miRNA:   3'- -UGUGUC-GCCGUU---------UACG-GCG-GCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 20127 0.67 0.898801
Target:  5'- uCGCAGcCGGCAgagGAUGCaCGagaCGCgGACg -3'
miRNA:   3'- uGUGUC-GCCGU---UUACG-GCg--GCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 20510 0.73 0.565273
Target:  5'- cCGCAGCGGCuuuGUGCCgagaccGUCGCCAc- -3'
miRNA:   3'- uGUGUCGCCGuu-UACGG------CGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 21229 0.68 0.864395
Target:  5'- cCGCuGUGGC---UGCCGCUGCUGAUc -3'
miRNA:   3'- uGUGuCGCCGuuuACGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 21485 0.66 0.921793
Target:  5'- -aGCuGGUGGCucAUGCCGCCaccggugGCCGAg -3'
miRNA:   3'- ugUG-UCGCCGuuUACGGCGG-------CGGUUg -5'
29852 3' -56.7 NC_006273.1 + 21488 0.73 0.55441
Target:  5'- cACGCAGCGGuCAGGUGUuacacaaCGaCGCCAGCu -3'
miRNA:   3'- -UGUGUCGCC-GUUUACG-------GCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 21907 0.7 0.762884
Target:  5'- aGCAUcGCGGaCAAcaacUGCaGCCGCCGGCa -3'
miRNA:   3'- -UGUGuCGCC-GUUu---ACGgCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 22286 0.67 0.89689
Target:  5'- uGCGCucaucuGCGGCAGcgGUacccgacgcggcagCGgCGCCAACg -3'
miRNA:   3'- -UGUGu-----CGCCGUUuaCG--------------GCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 22381 0.7 0.762884
Target:  5'- gACGCGGUucGGCGAAUGaaaCGuCCGCCuguACg -3'
miRNA:   3'- -UGUGUCG--CCGUUUACg--GC-GGCGGu--UG- -5'
29852 3' -56.7 NC_006273.1 + 22543 0.66 0.927647
Target:  5'- uCACAGUGGC--GUGCUuGCUGaUCAACa -3'
miRNA:   3'- uGUGUCGCCGuuUACGG-CGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 23500 0.7 0.73443
Target:  5'- gACACGagcGCGGCAc--GCCGuuGCCAcgaGCa -3'
miRNA:   3'- -UGUGU---CGCCGUuuaCGGCggCGGU---UG- -5'
29852 3' -56.7 NC_006273.1 + 29877 0.66 0.922336
Target:  5'- cACACAGCGGUcuucuucUGCUGauCCGgCGACa -3'
miRNA:   3'- -UGUGUCGCCGuuu----ACGGC--GGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 30599 0.72 0.615209
Target:  5'- gAC-CGGCGGCAcc-GgCGCCGCCAAg -3'
miRNA:   3'- -UGuGUCGCCGUuuaCgGCGGCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.