miRNA display CGI


Results 41 - 60 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 30663 0.68 0.849964
Target:  5'- cGCGCcgGGCGGCuuccugcggccgGCCGCggUGCCGGCg -3'
miRNA:   3'- -UGUG--UCGCCGuuua--------CGGCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 30670 0.66 0.922336
Target:  5'- uCGCAGCgGGCGcgccucGggGCuCGCCGgCGACa -3'
miRNA:   3'- uGUGUCG-CCGU------UuaCG-GCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 32818 0.68 0.856888
Target:  5'- aGCACAGCacGCugccgucgGCCGCCacGCCGGCc -3'
miRNA:   3'- -UGUGUCGc-CGuuua----CGGCGG--CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 33760 0.69 0.816537
Target:  5'- cGCGCAGCaGcCGAAUGauaCGCaggGCCAGCa -3'
miRNA:   3'- -UGUGUCGcC-GUUUACg--GCGg--CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 34047 0.68 0.864395
Target:  5'- cCGCGGagGGCGAcaaagaggagugGUcGCCGCCGCCGu- -3'
miRNA:   3'- uGUGUCg-CCGUU------------UA-CGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 34229 0.68 0.841291
Target:  5'- gGCAacccGCGGCAcaggGCCGCCGgCAGg -3'
miRNA:   3'- -UGUgu--CGCCGUuua-CGGCGGCgGUUg -5'
29852 3' -56.7 NC_006273.1 + 35896 0.67 0.898801
Target:  5'- -uGCAGCGGCg---GCCaGCacagcgggaGCCAACg -3'
miRNA:   3'- ugUGUCGCCGuuuaCGG-CGg--------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 36446 0.67 0.905026
Target:  5'- gUugGGCGGCAGggGCaUGCgGCCuuAGCg -3'
miRNA:   3'- uGugUCGCCGUUuaCG-GCGgCGG--UUG- -5'
29852 3' -56.7 NC_006273.1 + 36698 0.67 0.905026
Target:  5'- -aGCAGCGaacGUAGGUaGCgGCCGCgAGCg -3'
miRNA:   3'- ugUGUCGC---CGUUUA-CGgCGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 36796 0.72 0.655416
Target:  5'- -gGCGGCaGCAGGUGCaCGCUGCUcACg -3'
miRNA:   3'- ugUGUCGcCGUUUACG-GCGGCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 37036 0.76 0.442263
Target:  5'- aGCgAguGCGGCGAAUGCuCGCCcCCGACc -3'
miRNA:   3'- -UG-UguCGCCGUUUACG-GCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 37249 0.68 0.862164
Target:  5'- cGCgACGGCGGCGacgacgaggaggaaGAcGCCgugGCCGCCGAg -3'
miRNA:   3'- -UG-UGUCGCCGU--------------UUaCGG---CGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 37633 0.67 0.892352
Target:  5'- aACACGcgacccgcGCGGCAAAagGCaCGCUGUUGACg -3'
miRNA:   3'- -UGUGU--------CGCCGUUUa-CG-GCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 38008 0.69 0.799214
Target:  5'- aGCGCGGCGcGCGGGUGCaggugcagcgCGUC-CCAGCg -3'
miRNA:   3'- -UGUGUCGC-CGUUUACG----------GCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 38062 0.69 0.781307
Target:  5'- uCGCGGUccagcucgGGCAGcaGCCGCCGCgCGGCc -3'
miRNA:   3'- uGUGUCG--------CCGUUuaCGGCGGCG-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 38098 0.67 0.882955
Target:  5'- --uCGGCGGCGGGcGCCGacucgcgccccagCGCCAGCg -3'
miRNA:   3'- uguGUCGCCGUUUaCGGCg------------GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 38150 0.72 0.625261
Target:  5'- cGCGCAGaaaGuGCGAcagcuCCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUCg--C-CGUUuac--GGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 38253 0.66 0.932726
Target:  5'- gGCGC-GCGGCAcg-GUccccgaCGCCGCCGGa -3'
miRNA:   3'- -UGUGuCGCCGUuuaCG------GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 38324 0.68 0.833214
Target:  5'- cCGCuGCuGCcgcUGCCGCCGCCGucGCg -3'
miRNA:   3'- uGUGuCGcCGuuuACGGCGGCGGU--UG- -5'
29852 3' -56.7 NC_006273.1 + 38468 0.69 0.781307
Target:  5'- cGCACGGCgcguccccgccGGCGGccuccgucuccGUGCCGCuCGCCGcugGCg -3'
miRNA:   3'- -UGUGUCG-----------CCGUU-----------UACGGCG-GCGGU---UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.