miRNA display CGI


Results 61 - 80 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 38603 0.68 0.849185
Target:  5'- aGCACAGacgcuGGUucAGGUGCCgacgcacgGCCGUCAGCa -3'
miRNA:   3'- -UGUGUCg----CCG--UUUACGG--------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 38882 0.66 0.932229
Target:  5'- -uGCAGCGGUAca-GCCGCaccaccuCGCCcGCg -3'
miRNA:   3'- ugUGUCGCCGUuuaCGGCG-------GCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 39480 0.68 0.864395
Target:  5'- gGCGCAGCacucGCAccAGUGcCCGCUGUUGACg -3'
miRNA:   3'- -UGUGUCGc---CGU--UUAC-GGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 39540 0.75 0.469414
Target:  5'- uCACGGCGcGCAAcAUGCCGCgCGCCu-- -3'
miRNA:   3'- uGUGUCGC-CGUU-UACGGCG-GCGGuug -5'
29852 3' -56.7 NC_006273.1 + 39843 0.71 0.695332
Target:  5'- gGCGCGGCGGCGA--GCCGCUcaaaGUCAc- -3'
miRNA:   3'- -UGUGUCGCCGUUuaCGGCGG----CGGUug -5'
29852 3' -56.7 NC_006273.1 + 39973 0.82 0.196049
Target:  5'- cACACGGUguuucGGCAGAUGCaCGCCGCCGGa -3'
miRNA:   3'- -UGUGUCG-----CCGUUUACG-GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 40334 0.67 0.905026
Target:  5'- cUACGGCGGCGAuccCCGUCGagCGGCg -3'
miRNA:   3'- uGUGUCGCCGUUuacGGCGGCg-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 40496 0.66 0.927647
Target:  5'- ---aGGCGGCccg-GCUGCUGCCGGa -3'
miRNA:   3'- ugugUCGCCGuuuaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 41508 0.67 0.898801
Target:  5'- gGCGuCGGCgugaggauGGCAGc-GCCGgCGCCAGCa -3'
miRNA:   3'- -UGU-GUCG--------CCGUUuaCGGCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 41566 0.66 0.916796
Target:  5'- cCACAGCauGCGc-UGUCGCCGCCGc- -3'
miRNA:   3'- uGUGUCGc-CGUuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 41906 0.67 0.8717
Target:  5'- uGCACAcCGGCAuuauggacuUGCCGUCGCUg-- -3'
miRNA:   3'- -UGUGUcGCCGUuu-------ACGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 42063 0.67 0.905026
Target:  5'- --uCGGgGGCGGcgGuuGCUGCUGACg -3'
miRNA:   3'- uguGUCgCCGUUuaCggCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 42153 0.77 0.390757
Target:  5'- -aACGGCaGCAuuaacgccGCCGCCGCCAGCg -3'
miRNA:   3'- ugUGUCGcCGUuua-----CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 43576 0.7 0.762884
Target:  5'- -aGCAGCgccguaGGCAAGUGCCGCgGCgCGu- -3'
miRNA:   3'- ugUGUCG------CCGUUUACGGCGgCG-GUug -5'
29852 3' -56.7 NC_006273.1 + 43837 0.73 0.589149
Target:  5'- uGCACAGUaGGCuu-UGCCaccguagcccugaucGCCGCCGACc -3'
miRNA:   3'- -UGUGUCG-CCGuuuACGG---------------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 44434 0.71 0.705205
Target:  5'- aGCGCAuGCGGCAGuguuuCCGCgGCCAGu -3'
miRNA:   3'- -UGUGU-CGCCGUUuac--GGCGgCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 45891 0.8 0.267537
Target:  5'- aGCGCGGCGGCcgg-GCCGCCgagGCCGAUg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 46145 0.71 0.705205
Target:  5'- gGCaACGGUGGCGAAcGCUGCgacaCGCUAGCg -3'
miRNA:   3'- -UG-UGUCGCCGUUUaCGGCG----GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 46266 0.72 0.625261
Target:  5'- gACACGGUacuGCAucaGCCGCCGCCAu- -3'
miRNA:   3'- -UGUGUCGc--CGUuuaCGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 47309 0.68 0.862164
Target:  5'- gACACGGUGGaaauGGUGgacgagacgagaccCgCGCCGCCGGCg -3'
miRNA:   3'- -UGUGUCGCCgu--UUAC--------------G-GCGGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.