miRNA display CGI


Results 1 - 20 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 234636 0.66 0.922337
Target:  5'- gACACAGCacgccGCAAAcgcGCUGaggaCGCCGACg -3'
miRNA:   3'- -UGUGUCGc----CGUUUa--CGGCg---GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 234373 0.68 0.864395
Target:  5'- gGCGCAGCacucGCAccAGUGcCCGCUGUUGACg -3'
miRNA:   3'- -UGUGUCGc---CGU--UUAC-GGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 233774 0.66 0.932228
Target:  5'- -uGCAGCGGUAca-GCCGCaccaccuCGCCcGCg -3'
miRNA:   3'- ugUGUCGCCGUuuaCGGCG-------GCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 233361 0.69 0.781307
Target:  5'- cGCACGGCgcguccccgccGGCGGccuccgucuccGUGCCGCuCGCCGcugGCg -3'
miRNA:   3'- -UGUGUCG-----------CCGUU-----------UACGGCG-GCGGU---UG- -5'
29852 3' -56.7 NC_006273.1 + 233217 0.68 0.833214
Target:  5'- cCGCuGCuGCcgcUGCCGCCGCCGucGCg -3'
miRNA:   3'- uGUGuCGcCGuuuACGGCGGCGGU--UG- -5'
29852 3' -56.7 NC_006273.1 + 233146 0.66 0.932726
Target:  5'- gGCGC-GCGGCAcg-GUccccgaCGCCGCCGGa -3'
miRNA:   3'- -UGUGuCGCCGUuuaCG------GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 233043 0.72 0.62526
Target:  5'- cGCGCAGaaaGuGCGAcagcuCCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUCg--C-CGUUuac--GGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 232991 0.67 0.882955
Target:  5'- --uCGGCGGCGGGcGCCGacucgcgccccagCGCCAGCg -3'
miRNA:   3'- uguGUCGCCGUUUaCGGCg------------GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 232955 0.69 0.781307
Target:  5'- uCGCGGUccagcucgGGCAGcaGCCGCCGCgCGGCc -3'
miRNA:   3'- uGUGUCG--------CCGUUuaCGGCGGCG-GUUG- -5'
29852 3' -56.7 NC_006273.1 + 232901 0.69 0.799214
Target:  5'- aGCGCGGCGcGCGGGUGCaggugcagcgCGUC-CCAGCg -3'
miRNA:   3'- -UGUGUCGC-CGUUUACG----------GCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 231737 0.69 0.814833
Target:  5'- uCGCAGUGGCcccaccucggcAUGCCGgCGCCGGg -3'
miRNA:   3'- uGUGUCGCCGuu---------UACGGCgGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 229117 0.68 0.856888
Target:  5'- cCACAGUacccGGCGcugguUGUuuCGCCGCCGGCg -3'
miRNA:   3'- uGUGUCG----CCGUuu---ACG--GCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 227690 0.73 0.565273
Target:  5'- -uGCcGCGGCcacUGCCGCCGCCGc- -3'
miRNA:   3'- ugUGuCGCCGuuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 227426 0.73 0.595149
Target:  5'- gGCucaGGCGGCcu-UGUCGCCGCCAc- -3'
miRNA:   3'- -UGug-UCGCCGuuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 227362 0.68 0.849184
Target:  5'- gGCGCAuGUugGGUc--UGCCGCCGCCAc- -3'
miRNA:   3'- -UGUGU-CG--CCGuuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 227111 0.73 0.585155
Target:  5'- cCACGGCGGCGuggguaugcGCCGCUGCCc-- -3'
miRNA:   3'- uGUGUCGCCGUuua------CGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 226954 0.68 0.864395
Target:  5'- uACGCGuggauuuugggcGCGGCAAcUGCaCGgCGCCAAa -3'
miRNA:   3'- -UGUGU------------CGCCGUUuACG-GCgGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 221800 0.72 0.629283
Target:  5'- aGCACGGCGGCccggGCCGCCcggcgggugagcacCCGGCg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGCGGc-------------GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 221306 0.71 0.675443
Target:  5'- cACugAGCGGUucacaGCCccgGCCGCCGAUa -3'
miRNA:   3'- -UGugUCGCCGuuua-CGG---CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 221042 0.66 0.932726
Target:  5'- aGCucCGGCGGCAcaacUGCagCGCCGUCAGg -3'
miRNA:   3'- -UGu-GUCGCCGUuu--ACG--GCGGCGGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.