miRNA display CGI


Results 21 - 40 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 219708 0.68 0.856888
Target:  5'- uCACGGCGGCAAAcaGCagcaucgcaaCGCC-CCAGCu -3'
miRNA:   3'- uGUGUCGCCGUUUa-CG----------GCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 219252 0.71 0.715018
Target:  5'- cGCGCAGCuccGGCAuGGUGCUGCCggGCCGc- -3'
miRNA:   3'- -UGUGUCG---CCGU-UUACGGCGG--CGGUug -5'
29852 3' -56.7 NC_006273.1 + 218287 0.67 0.8717
Target:  5'- -gACGGCGuuccGCGAA-GUCGCCGCgGACc -3'
miRNA:   3'- ugUGUCGC----CGUUUaCGGCGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 218190 0.67 0.8717
Target:  5'- uCGC-GUGGCAuggGCgGCgGCCGACg -3'
miRNA:   3'- uGUGuCGCCGUuuaCGgCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 215701 0.68 0.840491
Target:  5'- gACAUGGCGGCAAc-GCCGgcgguuaUCGCCGAg -3'
miRNA:   3'- -UGUGUCGCCGUUuaCGGC-------GGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 214864 0.67 0.892352
Target:  5'- uGCAUGGUGGCGAcgGUCucggcacaaaGCCGCUgcGGCg -3'
miRNA:   3'- -UGUGUCGCCGUUuaCGG----------CGGCGG--UUG- -5'
29852 3' -56.7 NC_006273.1 + 214163 0.69 0.816537
Target:  5'- -aGCAGCGGCAgccacaGcgGCgGCaGCCGGCc -3'
miRNA:   3'- ugUGUCGCCGU------UuaCGgCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 213352 0.69 0.819926
Target:  5'- aGCACAGCagguGGCAGAgggagGucagggccaccgaucCCGCgGCCAGCa -3'
miRNA:   3'- -UGUGUCG----CCGUUUa----C---------------GGCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 213133 0.67 0.8717
Target:  5'- gAUGgAGCGGCAcgauGGUGaCCGUCGgCGACu -3'
miRNA:   3'- -UGUgUCGCCGU----UUAC-GGCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 213122 0.7 0.724763
Target:  5'- cGCACcGaCGGCGGAgccgcGUCGCuCGCCGGCg -3'
miRNA:   3'- -UGUGuC-GCCGUUUa----CGGCG-GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 212017 0.78 0.314088
Target:  5'- gAUGCGGCaGGCGAAUGCgcaGCCGCUGACa -3'
miRNA:   3'- -UGUGUCG-CCGUUUACGg--CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 209914 0.67 0.885684
Target:  5'- gGCGCucaacaacGCGGuCAAGccgGCCaGCUGCCAACc -3'
miRNA:   3'- -UGUGu-------CGCC-GUUUa--CGG-CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 206850 0.72 0.614205
Target:  5'- cGCGCAGUGGC--GUGCuacguauCGCgGCCGACu -3'
miRNA:   3'- -UGUGUCGCCGuuUACG-------GCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 206676 0.66 0.921247
Target:  5'- aGCAUAGCGGUgcgcagcagGUCGCCGuCCGu- -3'
miRNA:   3'- -UGUGUCGCCGuuua-----CGGCGGC-GGUug -5'
29852 3' -56.7 NC_006273.1 + 206301 0.71 0.675443
Target:  5'- aGCACGGCGGUGuuuUGCCGUCGUUu-- -3'
miRNA:   3'- -UGUGUCGCCGUuu-ACGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 204790 0.68 0.864395
Target:  5'- ---uGGCGGCGccGGUGCCGCCgGUCucGCg -3'
miRNA:   3'- ugugUCGCCGU--UUACGGCGG-CGGu-UG- -5'
29852 3' -56.7 NC_006273.1 + 204713 0.67 0.905026
Target:  5'- gGCACcGCGGCcg--GCCGCaggaaGCCGc- -3'
miRNA:   3'- -UGUGuCGCCGuuuaCGGCGg----CGGUug -5'
29852 3' -56.7 NC_006273.1 + 204359 0.69 0.781307
Target:  5'- -gGCGGCGG-AGGUGCUGCaCGUCAAa -3'
miRNA:   3'- ugUGUCGCCgUUUACGGCG-GCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 204179 0.72 0.645372
Target:  5'- cCGCAGCGGCAAccaggGCagccuggaCGCCGgCCGGCa -3'
miRNA:   3'- uGUGUCGCCGUUua---CG--------GCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 202339 0.69 0.787637
Target:  5'- -gACGGCGGUuuGAauuuagacgauuuuAUG-CGCCGCCAGCg -3'
miRNA:   3'- ugUGUCGCCG--UU--------------UACgGCGGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.