miRNA display CGI


Results 41 - 60 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 201955 0.72 0.645372
Target:  5'- uGCGCcGgGGCugucGCgCGCCGCCGACg -3'
miRNA:   3'- -UGUGuCgCCGuuuaCG-GCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 201155 0.66 0.916796
Target:  5'- uGC-CGGCGGCccuGUGCCGCggguugccCGUCAAg -3'
miRNA:   3'- -UGuGUCGCCGuu-UACGGCG--------GCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 200969 0.73 0.565272
Target:  5'- cACACGGCGGUuuc-GCCaCCGCUGACg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGcGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 198594 0.67 0.8717
Target:  5'- -aGCAGCGuGacc-UGCUGCCGCCAc- -3'
miRNA:   3'- ugUGUCGC-CguuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 197317 0.7 0.744012
Target:  5'- cGCGCGGCGGC---UGCUGCC-CgAGCu -3'
miRNA:   3'- -UGUGUCGCCGuuuACGGCGGcGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 197289 0.68 0.82496
Target:  5'- gGCGCgAGuCGGCGc---CCGCCGCCGAg -3'
miRNA:   3'- -UGUG-UC-GCCGUuuacGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 197129 0.7 0.724762
Target:  5'- --cCGGCGGCGucggggaccGUGCCGCgCGCCAu- -3'
miRNA:   3'- uguGUCGCCGUu--------UACGGCG-GCGGUug -5'
29852 3' -56.7 NC_006273.1 + 197071 0.74 0.506884
Target:  5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 196897 0.67 0.905026
Target:  5'- -gGCgAGCGGCAcgGAgacgGagGCCGCCGGCg -3'
miRNA:   3'- ugUG-UCGCCGU--UUa---CggCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 196856 0.77 0.348643
Target:  5'- uGCGCGGCGGgGccggcgacggggacGAcGUCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUCGCCgU--------------UUaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 196688 0.71 0.695333
Target:  5'- cACGCAGCGGCcguaguUGUCGCgGUCcGCg -3'
miRNA:   3'- -UGUGUCGCCGuuu---ACGGCGgCGGuUG- -5'
29852 3' -56.7 NC_006273.1 + 196545 0.66 0.911025
Target:  5'- gGCACcccGCGcGCGAcgcUGCUGCCucaGCCGGCg -3'
miRNA:   3'- -UGUGu--CGC-CGUUu--ACGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 196212 0.67 0.905026
Target:  5'- uACGC-GCGGguGAcGCCGCgcaGCCAGa -3'
miRNA:   3'- -UGUGuCGCCguUUaCGGCGg--CGGUUg -5'
29852 3' -56.7 NC_006273.1 + 196161 0.68 0.849184
Target:  5'- uCGCAGCgcgacgcgGGCAcgcUGCUGCCGCUcgGACg -3'
miRNA:   3'- uGUGUCG--------CCGUuu-ACGGCGGCGG--UUG- -5'
29852 3' -56.7 NC_006273.1 + 196145 0.68 0.841291
Target:  5'- gACACAGCaGCGucgcgccAUGCCGCgugaCGCUGACc -3'
miRNA:   3'- -UGUGUCGcCGUu------UACGGCG----GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 195846 0.67 0.898801
Target:  5'- gGCGC-GCGGCAuguUGCgCGCCGUgAu- -3'
miRNA:   3'- -UGUGuCGCCGUuu-ACG-GCGGCGgUug -5'
29852 3' -56.7 NC_006273.1 + 195787 0.68 0.849184
Target:  5'- aGCGCAaCGGCA--UGUCGCCGCg--- -3'
miRNA:   3'- -UGUGUcGCCGUuuACGGCGGCGguug -5'
29852 3' -56.7 NC_006273.1 + 195547 0.7 0.7535
Target:  5'- uUugAGCGGCuc--GCCGCCGCgCcACa -3'
miRNA:   3'- uGugUCGCCGuuuaCGGCGGCG-GuUG- -5'
29852 3' -56.7 NC_006273.1 + 194897 0.67 0.905026
Target:  5'- -gGCAGCaGCcgg-GCCGCCucgaccacGCCGACg -3'
miRNA:   3'- ugUGUCGcCGuuuaCGGCGG--------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 194698 0.66 0.922336
Target:  5'- gACACAGCacgccGCAAAcgcGCUGaggaCGCCGACg -3'
miRNA:   3'- -UGUGUCGc----CGUUUa--CGGCg---GCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.