miRNA display CGI


Results 1 - 20 of 387 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 190575 0.74 0.506884
Target:  5'- cUACAGCGGC---UGCCGagucacguCCGCCGGCg -3'
miRNA:   3'- uGUGUCGCCGuuuACGGC--------GGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 196856 0.77 0.348643
Target:  5'- uGCGCGGCGGgGccggcgacggggacGAcGUCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUCGCCgU--------------UUaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 3670 0.76 0.416023
Target:  5'- uGCGauCAGCGGCA--UGCCGaCGCCGACc -3'
miRNA:   3'- -UGU--GUCGCCGUuuACGGCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 73745 0.76 0.424664
Target:  5'- -gGCGGCGGCGGccgagGCCcggcagcggcGCCGCCAGCg -3'
miRNA:   3'- ugUGUCGCCGUUua---CGG----------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 37036 0.76 0.442263
Target:  5'- aGCgAguGCGGCGAAUGCuCGCCcCCGACc -3'
miRNA:   3'- -UG-UguCGCCGUUUACG-GCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 162784 0.75 0.450316
Target:  5'- -gGCGGCGGCAGcggccgcAUGUCGCUGCCGc- -3'
miRNA:   3'- ugUGUCGCCGUU-------UACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 75565 0.75 0.460268
Target:  5'- aACAacuGCGGCGAcuGUGCgCGCCGCUGGCc -3'
miRNA:   3'- -UGUgu-CGCCGUU--UACG-GCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 39540 0.75 0.469414
Target:  5'- uCACGGCGcGCAAcAUGCCGCgCGCCu-- -3'
miRNA:   3'- uGUGUCGC-CGUU-UACGGCG-GCGGuug -5'
29852 3' -56.7 NC_006273.1 + 139121 0.75 0.478652
Target:  5'- -gACGGCGGUAcuGAaGCCGCCGUCGAg -3'
miRNA:   3'- ugUGUCGCCGU--UUaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 193235 0.78 0.335838
Target:  5'- -gGCGGCGGCGuuAAUGCUGCCGUUGAUg -3'
miRNA:   3'- ugUGUCGCCGU--UUACGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 124138 0.78 0.335838
Target:  5'- -gGCGGCGGCAuuUGCCGCUguGUCGGCu -3'
miRNA:   3'- ugUGUCGCCGUuuACGGCGG--CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 17603 0.78 0.335838
Target:  5'- gAUACAGCGGU--AUGCuCGCCGCCGc- -3'
miRNA:   3'- -UGUGUCGCCGuuUACG-GCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 149599 0.82 0.200897
Target:  5'- -gGCGGCGGUcuAGAUGCCGCUGCCGGg -3'
miRNA:   3'- ugUGUCGCCG--UUUACGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 102137 0.81 0.210905
Target:  5'- uCGCAGCGGCAGuggcGCCGUCGCCAc- -3'
miRNA:   3'- uGUGUCGCCGUUua--CGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 75453 0.81 0.22672
Target:  5'- -aGCuGCGGCGGA-GCCGUCGCCGGCa -3'
miRNA:   3'- ugUGuCGCCGUUUaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 87530 0.8 0.261361
Target:  5'- aGCGCGGCGGCGgucucugucucuGGUGCCGCggCGCUAACc -3'
miRNA:   3'- -UGUGUCGCCGU------------UUACGGCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 45891 0.8 0.267537
Target:  5'- aGCGCGGCGGCcgg-GCCGCCgagGCCGAUg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 122245 0.79 0.286771
Target:  5'- gACugAGCGGCGcgcccucuGcgGCCGCCGCCuuACa -3'
miRNA:   3'- -UGugUCGCCGU--------UuaCGGCGGCGGu-UG- -5'
29852 3' -56.7 NC_006273.1 + 145121 0.79 0.29342
Target:  5'- -gGCAGCccgGGCGAuucGCCGCCGCCGAUa -3'
miRNA:   3'- ugUGUCG---CCGUUua-CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 153791 0.79 0.29342
Target:  5'- cCGCcGCGGCcGcgGCCGCCGCCuGCg -3'
miRNA:   3'- uGUGuCGCCGuUuaCGGCGGCGGuUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.