miRNA display CGI


Results 41 - 60 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 45891 0.8 0.267537
Target:  5'- aGCGCGGCGGCcgg-GCCGCCgagGCCGAUg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGCGG---CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 87530 0.8 0.261361
Target:  5'- aGCGCGGCGGCGgucucugucucuGGUGCCGCggCGCUAACc -3'
miRNA:   3'- -UGUGUCGCCGU------------UUACGGCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 75453 0.81 0.22672
Target:  5'- -aGCuGCGGCGGA-GCCGUCGCCGGCa -3'
miRNA:   3'- ugUGuCGCCGUUUaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 102137 0.81 0.210905
Target:  5'- uCGCAGCGGCAGuggcGCCGUCGCCAc- -3'
miRNA:   3'- uGUGUCGCCGUUua--CGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 149599 0.82 0.200897
Target:  5'- -gGCGGCGGUcuAGAUGCCGCUGCCGGg -3'
miRNA:   3'- ugUGUCGCCG--UUUACGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 73745 0.76 0.424664
Target:  5'- -gGCGGCGGCGGccgagGCCcggcagcggcGCCGCCAGCg -3'
miRNA:   3'- ugUGUCGCCGUUua---CGG----------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 37036 0.76 0.442263
Target:  5'- aGCgAguGCGGCGAAUGCuCGCCcCCGACc -3'
miRNA:   3'- -UG-UguCGCCGUUUACG-GCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 171564 0.74 0.5358
Target:  5'- uCACucGCGGC--GUGCCGCUGCCggUg -3'
miRNA:   3'- uGUGu-CGCCGuuUACGGCGGCGGuuG- -5'
29852 3' -56.7 NC_006273.1 + 87386 0.74 0.532881
Target:  5'- cCGCuuGCGGCGcaaccuccuccaccAccGCCGCCGCCGGCu -3'
miRNA:   3'- uGUGu-CGCCGU--------------UuaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 167318 0.74 0.526093
Target:  5'- cCACAGCGGCGGcaGCgGCgGCCAcgGCg -3'
miRNA:   3'- uGUGUCGCCGUUuaCGgCGgCGGU--UG- -5'
29852 3' -56.7 NC_006273.1 + 123283 0.74 0.526093
Target:  5'- cCAC-GCGGCcccgAGAUGCCGCCuuccacucgauGCCAGCa -3'
miRNA:   3'- uGUGuCGCCG----UUUACGGCGG-----------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 72267 0.74 0.526093
Target:  5'- gACACcagAGCGGCAggucGAUGaCGCUGCCGAUg -3'
miRNA:   3'- -UGUG---UCGCCGU----UUACgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 164531 0.74 0.515492
Target:  5'- aACACguuguugagggagGGCGGCGGcgGUCGgcCCGCCAGCg -3'
miRNA:   3'- -UGUG-------------UCGCCGUUuaCGGC--GGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 197071 0.74 0.506884
Target:  5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 58871 0.74 0.506884
Target:  5'- aGCACGGCGGCAGcacaCGCUGUCGGCc -3'
miRNA:   3'- -UGUGUCGCCGUUuacgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 190575 0.74 0.506884
Target:  5'- cUACAGCGGC---UGCCGagucacguCCGCCGGCg -3'
miRNA:   3'- uGUGUCGCCGuuuACGGC--------GGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 139121 0.75 0.478652
Target:  5'- -gACGGCGGUAcuGAaGCCGCCGUCGAg -3'
miRNA:   3'- ugUGUCGCCGU--UUaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 39540 0.75 0.469414
Target:  5'- uCACGGCGcGCAAcAUGCCGCgCGCCu-- -3'
miRNA:   3'- uGUGUCGC-CGUU-UACGGCG-GCGGuug -5'
29852 3' -56.7 NC_006273.1 + 75565 0.75 0.460268
Target:  5'- aACAacuGCGGCGAcuGUGCgCGCCGCUGGCc -3'
miRNA:   3'- -UGUgu-CGCCGUU--UACG-GCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 162784 0.75 0.450316
Target:  5'- -gGCGGCGGCAGcggccgcAUGUCGCUGCCGc- -3'
miRNA:   3'- ugUGUCGCCGUU-------UACGGCGGCGGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.