miRNA display CGI


Results 61 - 80 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 139121 0.75 0.478652
Target:  5'- -gACGGCGGUAcuGAaGCCGCCGUCGAg -3'
miRNA:   3'- ugUGUCGCCGU--UUaCGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 190575 0.74 0.506884
Target:  5'- cUACAGCGGC---UGCCGagucacguCCGCCGGCg -3'
miRNA:   3'- uGUGUCGCCGuuuACGGC--------GGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 21488 0.73 0.55441
Target:  5'- cACGCAGCGGuCAGGUGUuacacaaCGaCGCCAGCu -3'
miRNA:   3'- -UGUGUCGCC-GUUUACG-------GCgGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 200969 0.73 0.565272
Target:  5'- cACACGGCGGUuuc-GCCaCCGCUGACg -3'
miRNA:   3'- -UGUGUCGCCGuuuaCGGcGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 166666 0.73 0.575194
Target:  5'- -gACAGCGGCAAGUggggcGCCGCgaucgaaggguaCGUCAACa -3'
miRNA:   3'- ugUGUCGCCGUUUA-----CGGCG------------GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 227111 0.73 0.585155
Target:  5'- cCACGGCGGCGuggguaugcGCCGCUGCCc-- -3'
miRNA:   3'- uGUGUCGCCGUuua------CGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 43837 0.73 0.589149
Target:  5'- uGCACAGUaGGCuu-UGCCaccguagcccugaucGCCGCCGACc -3'
miRNA:   3'- -UGUGUCG-CCGuuuACGG---------------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 227426 0.73 0.595149
Target:  5'- gGCucaGGCGGCcu-UGUCGCCGCCAc- -3'
miRNA:   3'- -UGug-UCGCCGuuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 164235 0.73 0.601159
Target:  5'- uGCGCGGCgacggguGGCAggacuugaguaccaAGUGCCGCCGUCGGu -3'
miRNA:   3'- -UGUGUCG-------CCGU--------------UUACGGCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 117440 0.73 0.605169
Target:  5'- cUACcGUGGCAGGUG-CGUCGCCGGCu -3'
miRNA:   3'- uGUGuCGCCGUUUACgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 162394 0.74 0.545569
Target:  5'- -gGCGGCGGCGGGaGCgGCgGUCAGCa -3'
miRNA:   3'- ugUGUCGCCGUUUaCGgCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 148833 0.74 0.539701
Target:  5'- gGC-CGGCGGCGAucgucgcuggcuguUGCCGCCGCUGccGCg -3'
miRNA:   3'- -UGuGUCGCCGUUu-------------ACGGCGGCGGU--UG- -5'
29852 3' -56.7 NC_006273.1 + 58871 0.74 0.506884
Target:  5'- aGCACGGCGGCAGcacaCGCUGUCGGCc -3'
miRNA:   3'- -UGUGUCGCCGUUuacgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 197071 0.74 0.506884
Target:  5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 164531 0.74 0.515492
Target:  5'- aACACguuguugagggagGGCGGCGGcgGUCGgcCCGCCAGCg -3'
miRNA:   3'- -UGUG-------------UCGCCGUUuaCGGC--GGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 72267 0.74 0.526093
Target:  5'- gACACcagAGCGGCAggucGAUGaCGCUGCCGAUg -3'
miRNA:   3'- -UGUG---UCGCCGU----UUACgGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 123283 0.74 0.526093
Target:  5'- cCAC-GCGGCcccgAGAUGCCGCCuuccacucgauGCCAGCa -3'
miRNA:   3'- uGUGuCGCCG----UUUACGGCGG-----------CGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 167318 0.74 0.526093
Target:  5'- cCACAGCGGCGGcaGCgGCgGCCAcgGCg -3'
miRNA:   3'- uGUGUCGCCGUUuaCGgCGgCGGU--UG- -5'
29852 3' -56.7 NC_006273.1 + 87386 0.74 0.532881
Target:  5'- cCGCuuGCGGCGcaaccuccuccaccAccGCCGCCGCCGGCu -3'
miRNA:   3'- uGUGu-CGCCGU--------------UuaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 171564 0.74 0.5358
Target:  5'- uCACucGCGGC--GUGCCGCUGCCggUg -3'
miRNA:   3'- uGUGu-CGCCGuuUACGGCGGCGGuuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.