Results 1 - 20 of 387 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29852 | 3' | -56.7 | NC_006273.1 | + | 111250 | 1.1 | 0.0029 |
Target: 5'- gACACAGCGGCAAAUGCCGCCGCCAACg -3' miRNA: 3'- -UGUGUCGCCGUUUACGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 8272 | 0.74 | 0.497392 |
Target: 5'- -gGCAGCGGCGcAUacccacGCCGCCGUgGGCg -3' miRNA: 3'- ugUGUCGCCGUuUA------CGGCGGCGgUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 154925 | 0.74 | 0.516453 |
Target: 5'- ---aAGCGGCAGuacGCCGCCGCCu-- -3' miRNA: 3'- ugugUCGCCGUUua-CGGCGGCGGuug -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 38253 | 0.66 | 0.932726 |
Target: 5'- gGCGC-GCGGCAcg-GUccccgaCGCCGCCGGa -3' miRNA: 3'- -UGUGuCGCCGUuuaCG------GCGGCGGUUg -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 90291 | 0.78 | 0.321218 |
Target: 5'- cCGCAgGUGGUGAucagcGCCGCCGCCAGCg -3' miRNA: 3'- uGUGU-CGCCGUUua---CGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 135873 | 0.78 | 0.335838 |
Target: 5'- -aACAGCaGCAGccGCCGCCGCCAc- -3' miRNA: 3'- ugUGUCGcCGUUuaCGGCGGCGGUug -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 85790 | 0.77 | 0.358668 |
Target: 5'- -gGCAGCGGCAucuaGaCCGCCGCCAcucGCg -3' miRNA: 3'- ugUGUCGCCGUuua-C-GGCGGCGGU---UG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 42153 | 0.77 | 0.390757 |
Target: 5'- -aACGGCaGCAuuaacgccGCCGCCGCCAGCg -3' miRNA: 3'- ugUGUCGcCGUuua-----CGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 12401 | 0.76 | 0.433412 |
Target: 5'- cUACGGCGaGCAGAUgcgcacGCCGCUGCUAACc -3' miRNA: 3'- uGUGUCGC-CGUUUA------CGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 101879 | 0.74 | 0.494559 |
Target: 5'- aGCGUAGuCGGCuaacaaagcccggGCCGCCGCCAGCg -3' miRNA: 3'- -UGUGUC-GCCGuuua---------CGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 115503 | 0.75 | 0.477725 |
Target: 5'- gGCGCGGCGGCGAAgaaaaucgGCCGCgaauggaagcgcgCGCCAu- -3' miRNA: 3'- -UGUGUCGCCGUUUa-------CGGCG-------------GCGGUug -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 86543 | 0.76 | 0.424665 |
Target: 5'- -aGCGGCGGCAAcaGCCagcgacgaucGCCGCCGGCc -3' miRNA: 3'- ugUGUCGCCGUUuaCGG----------CGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 49374 | 0.79 | 0.286771 |
Target: 5'- -gGCAGCGGCGguAGUGCC-CUGCCGACc -3' miRNA: 3'- ugUGUCGCCGU--UUACGGcGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 48044 | 0.75 | 0.478653 |
Target: 5'- gACAUGGCGGUGAcggcGCCGCUGaCCGACg -3' miRNA: 3'- -UGUGUCGCCGUUua--CGGCGGC-GGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 103029 | 0.79 | 0.293421 |
Target: 5'- cCGCGGCGGCAGcgGCCGCgGCUucCa -3' miRNA: 3'- uGUGUCGCCGUUuaCGGCGgCGGuuG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 72602 | 0.76 | 0.424665 |
Target: 5'- aGCgACAuGCGGCcgcUGCCGCCGCCAc- -3' miRNA: 3'- -UG-UGU-CGCCGuuuACGGCGGCGGUug -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 86607 | 0.75 | 0.48798 |
Target: 5'- gACGCA-CGGC----GCCGCCGCCGGCc -3' miRNA: 3'- -UGUGUcGCCGuuuaCGGCGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 2178 | 0.74 | 0.506884 |
Target: 5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3' miRNA: 3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 212017 | 0.78 | 0.314088 |
Target: 5'- gAUGCGGCaGGCGAAUGCgcaGCCGCUGACa -3' miRNA: 3'- -UGUGUCG-CCGUUUACGg--CGGCGGUUG- -5' |
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29852 | 3' | -56.7 | NC_006273.1 | + | 144447 | 0.77 | 0.350939 |
Target: 5'- uGCACGGCGGCGAggcggugcgcGUGCCGuuguacCCGCCuACg -3' miRNA: 3'- -UGUGUCGCCGUU----------UACGGC------GGCGGuUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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