miRNA display CGI


Results 1 - 20 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 111250 1.1 0.0029
Target:  5'- gACACAGCGGCAAAUGCCGCCGCCAACg -3'
miRNA:   3'- -UGUGUCGCCGUUUACGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 8272 0.74 0.497392
Target:  5'- -gGCAGCGGCGcAUacccacGCCGCCGUgGGCg -3'
miRNA:   3'- ugUGUCGCCGUuUA------CGGCGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 154925 0.74 0.516453
Target:  5'- ---aAGCGGCAGuacGCCGCCGCCu-- -3'
miRNA:   3'- ugugUCGCCGUUua-CGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 38253 0.66 0.932726
Target:  5'- gGCGC-GCGGCAcg-GUccccgaCGCCGCCGGa -3'
miRNA:   3'- -UGUGuCGCCGUuuaCG------GCGGCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 90291 0.78 0.321218
Target:  5'- cCGCAgGUGGUGAucagcGCCGCCGCCAGCg -3'
miRNA:   3'- uGUGU-CGCCGUUua---CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 135873 0.78 0.335838
Target:  5'- -aACAGCaGCAGccGCCGCCGCCAc- -3'
miRNA:   3'- ugUGUCGcCGUUuaCGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 85790 0.77 0.358668
Target:  5'- -gGCAGCGGCAucuaGaCCGCCGCCAcucGCg -3'
miRNA:   3'- ugUGUCGCCGUuua-C-GGCGGCGGU---UG- -5'
29852 3' -56.7 NC_006273.1 + 42153 0.77 0.390757
Target:  5'- -aACGGCaGCAuuaacgccGCCGCCGCCAGCg -3'
miRNA:   3'- ugUGUCGcCGUuua-----CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 12401 0.76 0.433412
Target:  5'- cUACGGCGaGCAGAUgcgcacGCCGCUGCUAACc -3'
miRNA:   3'- uGUGUCGC-CGUUUA------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 101879 0.74 0.494559
Target:  5'- aGCGUAGuCGGCuaacaaagcccggGCCGCCGCCAGCg -3'
miRNA:   3'- -UGUGUC-GCCGuuua---------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 115503 0.75 0.477725
Target:  5'- gGCGCGGCGGCGAAgaaaaucgGCCGCgaauggaagcgcgCGCCAu- -3'
miRNA:   3'- -UGUGUCGCCGUUUa-------CGGCG-------------GCGGUug -5'
29852 3' -56.7 NC_006273.1 + 86543 0.76 0.424665
Target:  5'- -aGCGGCGGCAAcaGCCagcgacgaucGCCGCCGGCc -3'
miRNA:   3'- ugUGUCGCCGUUuaCGG----------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 49374 0.79 0.286771
Target:  5'- -gGCAGCGGCGguAGUGCC-CUGCCGACc -3'
miRNA:   3'- ugUGUCGCCGU--UUACGGcGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 48044 0.75 0.478653
Target:  5'- gACAUGGCGGUGAcggcGCCGCUGaCCGACg -3'
miRNA:   3'- -UGUGUCGCCGUUua--CGGCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 103029 0.79 0.293421
Target:  5'- cCGCGGCGGCAGcgGCCGCgGCUucCa -3'
miRNA:   3'- uGUGUCGCCGUUuaCGGCGgCGGuuG- -5'
29852 3' -56.7 NC_006273.1 + 72602 0.76 0.424665
Target:  5'- aGCgACAuGCGGCcgcUGCCGCCGCCAc- -3'
miRNA:   3'- -UG-UGU-CGCCGuuuACGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 86607 0.75 0.48798
Target:  5'- gACGCA-CGGC----GCCGCCGCCGGCc -3'
miRNA:   3'- -UGUGUcGCCGuuuaCGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 2178 0.74 0.506884
Target:  5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 212017 0.78 0.314088
Target:  5'- gAUGCGGCaGGCGAAUGCgcaGCCGCUGACa -3'
miRNA:   3'- -UGUGUCG-CCGUUUACGg--CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 144447 0.77 0.350939
Target:  5'- uGCACGGCGGCGAggcggugcgcGUGCCGuuguacCCGCCuACg -3'
miRNA:   3'- -UGUGUCGCCGUU----------UACGGC------GGCGGuUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.