miRNA display CGI


Results 21 - 40 of 387 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29852 3' -56.7 NC_006273.1 + 167257 0.74 0.5358
Target:  5'- gGCGCAGCGaGCGAucuaGCCGCuCGCUAGu -3'
miRNA:   3'- -UGUGUCGC-CGUUua--CGGCG-GCGGUUg -5'
29852 3' -56.7 NC_006273.1 + 154925 0.74 0.516453
Target:  5'- ---aAGCGGCAGuacGCCGCCGCCu-- -3'
miRNA:   3'- ugugUCGCCGUUua-CGGCGGCGGuug -5'
29852 3' -56.7 NC_006273.1 + 86543 0.76 0.424665
Target:  5'- -aGCGGCGGCAAcaGCCagcgacgaucGCCGCCGGCc -3'
miRNA:   3'- ugUGUCGCCGUUuaCGG----------CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 212017 0.78 0.314088
Target:  5'- gAUGCGGCaGGCGAAUGCgcaGCCGCUGACa -3'
miRNA:   3'- -UGUGUCG-CCGUUUACGg--CGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 82017 0.72 0.645372
Target:  5'- gACGCAG-GGCAcgcgcGUGCCGCCgGCCucgGACg -3'
miRNA:   3'- -UGUGUCgCCGUu----UACGGCGG-CGG---UUG- -5'
29852 3' -56.7 NC_006273.1 + 91973 0.73 0.585156
Target:  5'- aACGC-GCGGCAg--GCCGC-GCCGGCg -3'
miRNA:   3'- -UGUGuCGCCGUuuaCGGCGgCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 8272 0.74 0.497392
Target:  5'- -gGCAGCGGCGcAUacccacGCCGCCGUgGGCg -3'
miRNA:   3'- ugUGUCGCCGUuUA------CGGCGGCGgUUG- -5'
29852 3' -56.7 NC_006273.1 + 103029 0.79 0.293421
Target:  5'- cCGCGGCGGCAGcgGCCGCgGCUucCa -3'
miRNA:   3'- uGUGUCGCCGUUuaCGGCGgCGGuuG- -5'
29852 3' -56.7 NC_006273.1 + 193322 0.73 0.575194
Target:  5'- aACGuCAGCaGCAAccGCCGCCcCCGACa -3'
miRNA:   3'- -UGU-GUCGcCGUUuaCGGCGGcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 49374 0.79 0.286771
Target:  5'- -gGCAGCGGCGguAGUGCC-CUGCCGACc -3'
miRNA:   3'- ugUGUCGCCGU--UUACGGcGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 2178 0.74 0.506884
Target:  5'- -gGCAGCGGCAGcaGCgGCggCGCCGACg -3'
miRNA:   3'- ugUGUCGCCGUUuaCGgCG--GCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 93491 0.74 0.54557
Target:  5'- uCAgGGUGGuCAAAguggugacGCCGCCGCCGGCc -3'
miRNA:   3'- uGUgUCGCC-GUUUa-------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 48044 0.75 0.478653
Target:  5'- gACAUGGCGGUGAcggcGCCGCUGaCCGACg -3'
miRNA:   3'- -UGUGUCGCCGUUua--CGGCGGC-GGUUG- -5'
29852 3' -56.7 NC_006273.1 + 12401 0.76 0.433412
Target:  5'- cUACGGCGaGCAGAUgcgcacGCCGCUGCUAACc -3'
miRNA:   3'- uGUGUCGC-CGUUUA------CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 85790 0.77 0.358668
Target:  5'- -gGCAGCGGCAucuaGaCCGCCGCCAcucGCg -3'
miRNA:   3'- ugUGUCGCCGUuua-C-GGCGGCGGU---UG- -5'
29852 3' -56.7 NC_006273.1 + 90291 0.78 0.321218
Target:  5'- cCGCAgGUGGUGAucagcGCCGCCGCCAGCg -3'
miRNA:   3'- uGUGU-CGCCGUUua---CGGCGGCGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 105811 0.72 0.655416
Target:  5'- gGCAUAGCGGa----GCCGCCGaCGACu -3'
miRNA:   3'- -UGUGUCGCCguuuaCGGCGGCgGUUG- -5'
29852 3' -56.7 NC_006273.1 + 98206 0.72 0.645372
Target:  5'- cGCugAGCGGCAGcgGCgGCaCcCCGGCu -3'
miRNA:   3'- -UGugUCGCCGUUuaCGgCG-GcGGUUG- -5'
29852 3' -56.7 NC_006273.1 + 46266 0.72 0.625261
Target:  5'- gACACGGUacuGCAucaGCCGCCGCCAu- -3'
miRNA:   3'- -UGUGUCGc--CGUuuaCGGCGGCGGUug -5'
29852 3' -56.7 NC_006273.1 + 93305 0.73 0.585156
Target:  5'- aGCGCAagccGUGGUAAccGUCGCCGCUGGCg -3'
miRNA:   3'- -UGUGU----CGCCGUUuaCGGCGGCGGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.